JetBrains-Research / span-analysis Public

Datasets analysis and comparison scripts for SPAN semi-supervised peak analyzer

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Name		Name	Last commit message	Last commit date
Latest commit History 269 Commits
2019_abf_paper		2019_abf_paper
2023_chips		2023_chips
2023_immgen		2023_immgen
mcgill		mcgill
.gitignore		.gitignore
2018 - ABF.ipynb		2018 - ABF.ipynb
2022 - Comparative Analysis Benchmark.ipynb		2022 - Comparative Analysis Benchmark.ipynb
2022 - Peaks lengths.ipynb		2022 - Peaks lengths.ipynb
2022 - Signal profiles.ipynb		2022 - Signal profiles.ipynb
2022 - Span Hmm LL.ipynb		2022 - Span Hmm LL.ipynb
2023 - chips.ipynb		2023 - chips.ipynb
2023 - chromhmm.ipynb		2023 - chromhmm.ipynb
2023 - control.ipynb		2023 - control.ipynb
2023 - figures.ipynb		2023 - figures.ipynb
2023 - noise_mix.ipynb		2023 - noise_mix.ipynb
2023 - rnaseq.ipynb		2023 - rnaseq.ipynb
2023 - wiggle.ipynb		2023 - wiggle.ipynb
2024 - Immgen ATAC-Seq.ipynb		2024 - Immgen ATAC-Seq.ipynb
2024 - deep_analysis.ipynb		2024 - deep_analysis.ipynb
2024 - downsample.ipynb		2024 - downsample.ipynb
README.md		README.md
SPAN Comparison Opendnase.ipynb		SPAN Comparison Opendnase.ipynb
SPAN Comparison Opendnase.png		SPAN Comparison Opendnase.png
tmm.R		tmm.R