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@JaneliaSciComp

Howard Hughes Medical Institute

GitHub organization maintained by Scientific Computing Software at HHMI's Janelia Research Campus for use by HHMI staff and external collaborators.

Popular repositories Loading

  1. bigstream bigstream Public

    Tools for distributed alignment of massive images

    Jupyter Notebook 85 21

  2. NIDAQ.jl NIDAQ.jl Public

    National Instruments Data Acquisition Interface

    Julia 48 16

  3. JRCLUST JRCLUST Public

    JRCLUST

    MATLAB 35 22

  4. multifish multifish Public

    EASI-FISH analysis pipeline for spatial transcriptomics

    Jupyter Notebook 35 13

  5. xarray-multiscale xarray-multiscale Public

    scalable multiscale image pyramids in python

    Python 28 3

  6. BigStitcher-Spark BigStitcher-Spark Public

    Running compute-intense parts of BigStitcher distributed

    Java 26 13

Repositories

Showing 10 of 285 repositories
  • neuronbridge-python Public

    Python API for NeuronBridge

    Jupyter Notebook 0 BSD-3-Clause 0 1 0 Updated Jul 29, 2025
  • doi_common Public

    Library of common DOI-related functions for Python

    Python 0 BSD-3-Clause 0 0 0 Updated Jul 29, 2025
  • dis-utilities Public

    Utilities for Data and Information Services

    JavaScript 1 BSD-3-Clause 1 14 1 Updated Jul 29, 2025
  • gpt-semantic-search Public

    Semantic search for Janelia resources using GPT models

    Python 3 BSD-3-Clause 1 1 0 Updated Jul 29, 2025
  • fileglancer Public

    Browse, share, and publish data in the Janelia file system

    TypeScript 1 BSD-3-Clause 0 0 4 Updated Jul 28, 2025
  • fileglancer-hub Public

    Jupyterhub launcher configuration for the fileglancer application

    HTML 0 BSD-3-Clause 0 0 0 Updated Jul 28, 2025
  • fileglancer-central Public

    Central metadata server for Fileglancer deployments

    Python 0 BSD-3-Clause 0 0 0 Updated Jul 28, 2025
  • EM_recon_pipeline Public

    Pipeline scripts and tools for reconstructing Electron Microscopy volumes.

    Python 3 BSD-3-Clause 3 0 2 Updated Jul 28, 2025
  • pydantic-ome-ngff Public

    Pydantic models for OME-NGFF

    Python 24 BSD-3-Clause 3 6 1 Updated Jul 28, 2025
  • jacs-compute Public

    JAnelia Compute Services (JACS)

    Java 1 BSD-3-Clause 0 0 0 Updated Jul 28, 2025