Merge pull request ash211#28 from pgaurav/master

please merge these changes
Janderson3 · Jun 24, 2011 · 3cc1c50 · 3cc1c50
2 parents 57734a3 + 4117ca8
commit 3cc1c50
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diff --git a/gtfold-mfe/data/Turner99/tstacke.DAT b/gtfold-mfe/data/Turner99/tstacke.DAT
@@ -0,0 +1,16 @@
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+inf	inf	inf	inf	inf	inf	inf	inf	inf	inf	inf	inf	-0.60	-0.70	inf	-0.70
+inf	inf	inf	inf	inf	inf	inf	inf	inf	inf	inf	inf	-0.80	inf	-0.80	inf
+inf	inf	inf	inf	inf	inf	inf	inf	inf	inf	inf	inf	inf	-0.80	inf	-0.80
+inf	inf	inf	inf	inf	inf	inf	inf	-1.50	-1.50	-1.40	inf	inf	inf	inf	inf
+inf	inf	inf	inf	inf	inf	inf	inf	-1.00	-1.10	inf	-0.80	inf	inf	inf	inf
+inf	inf	inf	inf	inf	inf	inf	inf	-1.40	inf	-1.60	inf	inf	inf	inf	inf
+inf	inf	inf	inf	inf	inf	inf	inf	inf	-1.40	inf	-1.20	inf	inf	inf	inf
+inf	inf	inf	inf	-1.10	-1.50	-1.30	inf	inf	inf	inf	inf	-0.30	-1.00	-0.80	inf
+inf	inf	inf	inf	-1.10	-0.70	inf	-0.50	inf	inf	inf	inf	-0.60	-0.70	inf	-0.70
+inf	inf	inf	inf	-1.60	inf	-1.40	inf	inf	inf	inf	inf	-0.60	inf	-0.80	inf
+inf	inf	inf	inf	inf	-1.00	inf	-0.70	inf	inf	inf	inf	inf	-0.80	inf	-0.80
+-1.00	-0.80	-1.10	inf	inf	inf	inf	inf	-1.00	-0.80	-1.10	inf	inf	inf	inf	inf
+-0.70	-0.60	inf	-0.50	inf	inf	inf	inf	-0.70	-0.60	inf	-0.50	inf	inf	inf	inf
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+inf	-0.60	inf	-0.50	inf	inf	inf	inf	inf	-0.60	-1.10	-0.50	inf	inf	inf	inf
diff --git a/gtfold-mfe/data/UNAParams/asint1x2.DAT b/gtfold-mfe/data/UNAParams/asint1x2.DAT
@@ -0,0 +1,96 @@
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+2.30	5.50	3.70	5.50	1.60	4.80	3.00	4.80	1.60	4.80	3.00	4.80	2.30	5.50	3.70	5.50	2.30	5.50	3.70	5.50	2.30	5.50	3.70	5.50
+5.50	5.50	5.50	5.50	4.80	4.80	4.80	4.80	4.80	4.80	4.80	4.80	5.50	5.50	5.50	5.50	5.50	5.50	5.50	5.50	5.50	5.50	5.50	5.50
+5.50	5.50	5.50	5.50	4.80	4.80	4.80	4.80	4.80	4.80	4.80	4.80	5.50	5.50	5.50	5.50	5.50	5.50	5.50	5.50	5.50	5.50	5.50	5.50
+4.00	3.40	5.50	3.70	3.30	2.70	4.80	3.00	3.30	2.70	4.80	3.00	4.00	3.40	5.50	3.70	4.00	3.40	5.50	3.70	4.00	3.40	5.50	3.70
+5.50	5.50	5.50	5.50	4.80	4.80	4.80	4.80	4.80	4.80	4.80	4.80	5.50	5.50	5.50	5.50	5.50	5.50	5.50	5.50	5.50	5.50	5.50	5.50
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+5.50	3.70	5.50	2.80	4.80	3.00	4.80	2.10	4.80	3.00	4.80	2.10	5.50	3.70	5.50	2.80	5.50	3.70	5.50	2.80	5.50	3.70	5.50	2.80
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+5.50	5.50	5.50	5.50	4.80	4.80	4.80	4.80	4.80	4.80	4.80	4.80	5.50	5.50	5.50	5.50	5.50	5.50	5.50	5.50	5.50	5.50	5.50	5.50
+5.50	5.50	5.50	5.50	4.80	4.80	4.80	4.80	4.80	4.80	4.80	4.80	5.50	5.50	5.50	5.50	5.50	5.50	5.50	5.50	5.50	5.50	5.50	5.50
+4.00	3.40	5.50	3.70	3.30	2.70	4.80	3.00	3.30	2.70	4.80	3.00	4.00	3.40	5.50	3.70	4.00	3.40	5.50	3.70	4.00	3.40	5.50	3.70
+5.50	5.50	5.50	5.50	4.80	4.80	4.80	4.80	4.80	4.80	4.80	4.80	5.50	5.50	5.50	5.50	5.50	5.50	5.50	5.50	5.50	5.50	5.50	5.50
+5.50	3.20	5.50	2.70	4.80	2.50	4.80	2.00	4.80	2.50	4.80	2.00	5.50	3.20	5.50	2.70	5.50	3.20	5.50	2.70	5.50	3.20	5.50	2.70
diff --git a/gtfold-mfe/data/UNAParams/dangle.DAT b/gtfold-mfe/data/UNAParams/dangle.DAT
@@ -0,0 +1,8 @@
+inf	inf	inf	inf	inf	inf	inf	inf	inf	inf	inf	inf	-0.80	-0.50	-0.80	-0.60
+inf	inf	inf	inf	inf	inf	inf	inf	-1.70	-0.80	-1.70	-1.20	inf	inf	inf	inf
+inf	inf	inf	inf	-1.10	-0.40	-1.30	-0.60	inf	inf	inf	inf	-0.80	-0.50	-0.80	-0.60
+-0.70	-0.10	-0.70	-0.10	inf	inf	inf	inf	-0.70	-0.10	-0.70	-0.10	inf	inf	inf	inf
+inf	inf	inf	inf	inf	inf	inf	inf	inf	inf	inf	inf	-0.30	-0.10	-0.20	-0.20
+inf	inf	inf	inf	inf	inf	inf	inf	-0.20	-0.30	-0.00	-0.00	inf	inf	inf	inf
+inf	inf	inf	inf	-0.50	-0.30	-0.20	-0.10	inf	inf	inf	inf	-0.30	-0.10	-0.20	-0.20
+-0.30	-0.30	-0.40	-0.20	inf	inf	inf	inf	-0.30	-0.30	-0.40	-0.20	inf	inf	inf	inf
diff --git a/gtfold-mfe/data/UNAParams/extinction.DAT b/gtfold-mfe/data/UNAParams/extinction.DAT
@@ -0,0 +1,22 @@
+
+
+   13650  13650
+   10670  10670
+   12790  12790
+   12140  11420
+   10670  10670
+   7520   7520
+   9390   9390
+   8370   7660
+   12920  12920
+   9190   9190
+   11430  11430
+   10960  10220
+   12520  11780
+   8900   8150
+   10400  9700
+   10110  8610
+    15340  15340
+    7600   7600
+    12160  12160
+    10210  8700
diff --git a/gtfold-mfe/data/UNAParams/hexaloop.DAT b/gtfold-mfe/data/UNAParams/hexaloop.DAT
diff --git a/gtfold-mfe/data/UNAParams/loop.DAT b/gtfold-mfe/data/UNAParams/loop.DAT
@@ -0,0 +1,30 @@
+1	inf	3.80	inf
+2	inf	2.80	inf
+3	inf	3.20	5.70
+4	1.70	3.60	5.60
+5	1.80	4.00	5.60
+6	2.00	4.40	5.40
+7	2.20	4.60	5.90
+8	2.30	4.70	5.60
+9	2.40	4.80	6.40
+10	2.50	4.90	6.50
+11	2.60	5.00	6.60
+12	2.70	5.10	6.70
+13	2.80	5.20	6.80
+14	2.90	5.30	6.90
+15	3.00	5.40	6.90
+16	3.00	5.40	7.00
+17	3.10	5.50	7.10
+18	3.10	5.50	7.10
+19	3.20	5.60	7.20
+20	3.30	5.70	7.20
+21	3.30	5.70	7.30
+22	3.40	5.80	7.30
+23	3.40	5.80	7.40
+24	3.40	5.80	7.40
+25	3.50	5.90	7.50
+26	3.50	5.90	7.50
+27	3.60	6.00	7.50
+28	3.60	6.00	7.60
+29	3.60	6.00	7.60
+30	3.70	6.10	7.70
diff --git a/gtfold-mfe/data/UNAParams/miscloop.DAT b/gtfold-mfe/data/UNAParams/miscloop.DAT
@@ -0,0 +1,13 @@
+1.07857764
+3.00
+.50	.50	.50	.50
+3.40	.00	.40
+10.10	-0.30	-0.30
+0.50
+-2.20
+0.30
+1.60
+1.40
+4.10
+1
+37
diff --git a/gtfold-mfe/data/UNAParams/sint2.DAT b/gtfold-mfe/data/UNAParams/sint2.DAT
@@ -0,0 +1,24 @@
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