GeoMx

The development and implementation of workflows for downstream analysis of GeoMx experiments.

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Name		Name	Last commit message	Last commit date
Latest commit History 17 Commits
Step06_Integration_GeoMx_SC_DCOX		Step06_Integration_GeoMx_SC_DCOX
README.md		README.md
Step00.1_scRNAseq_enrichment_analysis_GSE184950.R		Step00.1_scRNAseq_enrichment_analysis_GSE184950.R
Step00_scRNAseq_enrichment_analysis_GSE184950.R		Step00_scRNAseq_enrichment_analysis_GSE184950.R
Step01_Transformation_saver.R		Step01_Transformation_saver.R
Step02_flemix_DCOX_multiple_Generic.sh		Step02_flemix_DCOX_multiple_Generic.sh
Step03_merge_output_files_DCOX_visualization.R		Step03_merge_output_files_DCOX_visualization.R
Step03_merge_output_files_DCOX_visualization.sh		Step03_merge_output_files_DCOX_visualization.sh
Step04.0_Summary_Enrichment.R		Step04.0_Summary_Enrichment.R
Step05.0_Histogram_GeoMx_for_QC.R		Step05.0_Histogram_GeoMx_for_QC.R
Step0_GeoMx_Analysis_S1+calculating-sample-size.R		Step0_GeoMx_Analysis_S1+calculating-sample-size.R
Step0_Machine_output_S3_S4.R		Step0_Machine_output_S3_S4.R
Step0_Machine_output_S3_S4_USED.R		Step0_Machine_output_S3_S4_USED.R
Step0_Machine_output_S3_reseq.R		Step0_Machine_output_S3_reseq.R
Step0_Machine_output_S3_reseq_Terra.R		Step0_Machine_output_S3_reseq_Terra.R
c5.all.v2023.1.Hs.entrez.gmt		c5.all.v2023.1.Hs.entrez.gmt