Fix edgecase with 1 input value that is not selected in subsample_data #627
Workflow file for this run
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name: CICD | |
on: | |
# Run CICD for non-draft pull request | |
pull_request: | |
branches: | |
- main | |
# Also run when the pull request merges (which generates a push) | |
# So that we can tag the docker image appropriately. | |
push: | |
branches: | |
- main | |
- staging-* | |
jobs: | |
CICD: | |
runs-on: self-hosted | |
steps: | |
- name: Checkout branch | |
uses: actions/checkout@v4 | |
- name: Build docker image | |
run: docker build --build-arg http_proxy=${{ secrets.PROXY_URL }} --build-arg https_proxy=${{ secrets.PROXY_URL }} -t myria3d . | |
- name: Run pytest | |
run: > | |
docker run | |
--ipc=host | |
myria3d | |
python -m | |
pytest -rA -v | |
--ignore=actions-runner | |
# IMPORTANT: Always run images with --ipc=host and --shm-size=2gb (at least) to enable | |
# sufficient shared memory when predicting on large files. | |
- name: Example inference run via Docker with default config and checkpoint | |
run: > | |
docker run | |
-v /var/data/cicd/CICD_github_assets/myria3d_V3.7.0/inputs/:/inputs/ | |
-v /var/data/cicd/CICD_github_assets/myria3d_V3.7.0/outputs/:/outputs/ | |
--ipc=host | |
--shm-size=2gb | |
myria3d | |
python run.py | |
predict.src_las=/inputs/792000_6272000_subset_buildings.las | |
datamodule.epsg=2154 | |
predict.output_dir=/outputs/ | |
task.task_name=predict | |
# predict.subtile_overlap specifies overlap between adjacent samples (in meters). | |
- name: Example inference run via Docker with inference-time subtiles overlap to smooth-out results. | |
run: > | |
docker run | |
-v /var/data/cicd/CICD_github_assets/myria3d_V3.7.0/inputs/:/inputs/ | |
-v /var/data/cicd/CICD_github_assets/myria3d_V3.7.0/outputs/:/outputs/ | |
--ipc=host | |
--shm-size=2gb | |
myria3d | |
python run.py | |
--config-path /inputs/ | |
--config-name proto151_V2.0_epoch_100_Myria3DV3.1.0_predict_config_V3.7.0 | |
predict.ckpt_path=/inputs/proto151_V2.0_epoch_100_Myria3DV3.1.0.ckpt | |
datamodule.epsg=2154 | |
predict.src_las=/inputs/792000_6272000_subset_buildings.las | |
predict.output_dir=/outputs/ | |
predict.subtile_overlap=25 | |
datamodule.batch_size=10 | |
predict.interpolator.probas_to_save=[building,ground] | |
task.task_name=predict | |
- name: Check code neatness (linter) | |
run: docker run myria3d python -m flake8 | |
# Everything ran so we tag the valid docker image to keep it | |
# This happens for push events, which are in particular | |
# triggered when a pull request is merged. | |
- name: Tag the docker image with branch name | |
if: github.event_name == 'push' | |
run: | | |
docker tag myria3d:latest myria3d:${{github.ref_name}} | |
docker run myria3d:${{github.ref_name}} bash # Run the new, tagged image at least once so that is it not prunned by mistake when using docker system prune | |
# docker save myria3d:${{github.ref_name}} -o /var/data/cicd/CICD_github_assets/CICD_docker_images/myria3d_${github.ref_name}.tar # Save the docker image as myria3d_${github.ref_name}.tar | |
# get version number and date, to tag the image pushed to a private docker registry | |
- name: get version number | |
id: tag | |
run: | | |
echo "VERSION=$(docker run myria3d grep '__version__' package_metadata.yaml| cut -d\" -f2)" >> $GITHUB_ENV | |
echo "DATE=$(date '+%Y.%m.%d')" >> $GITHUB_ENV | |
# show possible tags, for debugging purpose | |
- name: Print tags | |
run: | | |
echo "${{ env.VERSION }}" | |
echo "${{ env.DATE }}" | |
- name: push main docker on nexus (tagged with a date) | |
# we push on nexus an image from the main branch when it has been updated (push or accepted pull request) | |
if: ((github.ref_name == 'main') && (github.event_name == 'push')) | |
run: | | |
docker tag myria3d ${{ secrets.DOCKER_REGISTRY }}/lidar_hd/myria3d:${{ env.VERSION }}-${{ env.DATE }} | |
docker login ${{ secrets.DOCKER_REGISTRY }} --username svc_lidarhd --password ${{ secrets.PASSWORD_SVC_LIDARHD }} | |
docker push ${{ secrets.DOCKER_REGISTRY }}/lidar_hd/myria3d:${{ env.VERSION }}-${{ env.DATE }} | |
- name: push branch docker on nexus (tagged with the branch name) | |
# we push on nexus an image from a branch when it's pushed | |
if: ((github.event_name == 'push') && (github.ref_name != 'main')) | |
run: | | |
docker tag myria3d ${{ secrets.DOCKER_REGISTRY }}/lidar_hd/myria3d:${{ env.VERSION }}-${{github.ref_name}} | |
docker login ${{ secrets.DOCKER_REGISTRY }} --username svc_lidarhd --password ${{ secrets.PASSWORD_SVC_LIDARHD }} | |
docker push ${{ secrets.DOCKER_REGISTRY }}/lidar_hd/myria3d:${{ env.VERSION }}-${{github.ref_name}} | |
- name: Clean dangling docker images | |
if: always() # always do it, even if something failed | |
run: docker system prune --force # remove dangling docker images, without asking user for confirmation |