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@nalcala nalcala released this 27 Oct 16:10
· 10 commits to master since this release
v1.2
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Learn about vigilant mode.

New features:
• rename option --tn_pairs to --input_file (because it now also works for germline mode)
• add option to provide sample name to be used in VCF naming (triggered when sample column is detected in input_file)
• add option to provide vcf to perform genotyping (triggered when vcf column is detected in input_file)
Debug:
• add INFO field for AF and COV to VCF to avoid crashes for downstream analyses with bcftools when using AF option

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