GitHub - Heather1999/Clustering-of-immune-hot-cold-subgroups-

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 8 Commits
CHOL_raw/CHOL_raw		CHOL_raw/CHOL_raw
playground		playground
.Rhistory		.Rhistory
109 gene PCA.png		109 gene PCA.png
109gene.csv		109gene.csv
109gene_auc.png		109gene_auc.png
119_CD79A_box.png		119_CD79A_box.png
20gene AUC.png		20gene AUC.png
2geneBOX.py		2geneBOX.py
2gene_survival.py		2gene_survival.py
GSE1.py		GSE1.py
GSE107943_109.csv		GSE107943_109.csv
GSE107943_109_or.csv		GSE107943_109_or.csv
GSE107943_Box.csv		GSE107943_Box.csv
GSE107943_RPKM.xlsx		GSE107943_RPKM.xlsx
GSE107943_TLS.csv		GSE107943_TLS.csv
GSE107943_series_matrix.txt		GSE107943_series_matrix.txt
GSE107943_survival - 2 gene.csv		GSE107943_survival - 2 gene.csv
GSE107943_survival.csv		GSE107943_survival.csv
GSE107_DFI.png		GSE107_DFI.png
GSE107_Overall survival.png		GSE107_Overall survival.png
GSE107_PCA.png		GSE107_PCA.png
GSE107_PCA1D.png		GSE107_PCA1D.png
GSE107_heatmap.png		GSE107_heatmap.png
GSE119336_105RNA.csv		GSE119336_105RNA.csv
GSE119336_Box.csv		GSE119336_Box.csv
GSE119336_RNA.xlsx		GSE119336_RNA.xlsx
GSE119336_TLS.csv		GSE119336_TLS.csv
GSE119336_TLS.png		GSE119336_TLS.png
GSE119_2gene_PC1.png		GSE119_2gene_PC1.png
GSE119_PCA.png		GSE119_PCA.png
GSE119_heatmap.png		GSE119_heatmap.png
HW3.py		HW3.py
MCP_count_GSE107943.csv		MCP_count_GSE107943.csv
MCP_count_GSE119.csv		MCP_count_GSE119.csv
MCP_count_new.csv		MCP_count_new.csv
MCP_count_new_clu.csv		MCP_count_new_clu.csv
MCP_counter_GSE107.py		MCP_counter_GSE107.py
MCP_counter_GSE119.py		MCP_counter_GSE119.py
MCP_counter_TCGA.py		MCP_counter_TCGA.py
MCPscore PCA.png		MCPscore PCA.png
Mixed_PCA1D.png		Mixed_PCA1D.png
PC1_score.csv		PC1_score.csv
Plotting&AUC ROC - GSE107.py		Plotting&AUC ROC - GSE107.py
Plotting&AUC ROC - GSE119.py		Plotting&AUC ROC - GSE119.py
Plotting&AUC ROC - MIXED.py		Plotting&AUC ROC - MIXED.py
Plotting&AUC ROC.py		Plotting&AUC ROC.py
ROC_withoutopt.png		ROC_withoutopt.png
TCGA survival_2gene - 複製.csv		TCGA survival_2gene - 複製.csv
TCGA survival_2gene.csv		TCGA survival_2gene.csv
TCGA survival_hotcold.csv		TCGA survival_hotcold.csv
TCGA-CHOL_clinical.csv		TCGA-CHOL_clinical.csv
TCGA109gene.csv		TCGA109gene.csv
TCGA2genePCA.png		TCGA2genePCA.png
TCGA2geneeigen		TCGA2geneeigen
TCGA2geneeigen.py		TCGA2geneeigen.py
TCGA_DFI.png		TCGA_DFI.png
TCGA_OS.png		TCGA_OS.png
TCGA_PFI.png		TCGA_PFI.png
TLS analysis.py		TLS analysis.py
TLS marker gene.csv		TLS marker gene.csv
draw gene pca & P1 & gene ranking.py		draw gene pca & P1 & gene ranking.py
draw gene pca_old.py		draw gene pca_old.py
draw mcp pca.py		draw mcp pca.py
gene_ranking.csv		gene_ranking.csv
genes.txt		genes.txt
gse CD79A OSP.png		gse CD79A OSP.png
gse MS4A1 DFI.png		gse MS4A1 DFI.png
gse MS4A1 OSP.png		gse MS4A1 OSP.png
gse107943_sample.csv		gse107943_sample.csv
gse107_CD79A_box.png		gse107_CD79A_box.png
gse107_MS4A1_box.png		gse107_MS4A1_box.png
gse119_MS4A1_box.png		gse119_MS4A1_box.png
gse_CD79A_DFI.png		gse_CD79A_DFI.png
heatmap.png		heatmap.png
log2_gse119336_109.csv		log2_gse119336_109.csv
min.csv		min.csv
my_data.csv		my_data.csv
pca_score.csv		pca_score.csv
result_df - Box.csv		result_df - Box.csv
result_df.csv		result_df.csv
result_df_60483gene.csv		result_df_60483gene.csv
result_df_TLS.csv		result_df_TLS.csv
sample filter generator.py		sample filter generator.py
survival analysis.py		survival analysis.py
tcga_931_box.png		tcga_931_box.png
tcga_973_BOX.png		tcga_973_BOX.png
tcga_CD79A_DFI.png		tcga_CD79A_DFI.png
tcga_CD79A_OS.png		tcga_CD79A_OS.png
tcga_CD79A_PFI.png		tcga_CD79A_PFI.png
tcga_MS4A1_DFI.png		tcga_MS4A1_DFI.png
tcga_MS4A1_OS.png		tcga_MS4A1_OS.png
tcga_MS4A1_PFI.png		tcga_MS4A1_PFI.png
top10cell.csv		top10cell.csv
troubleshooting.py		troubleshooting.py
try - 複製.py		try - 複製.py