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TSMP-PDAF Update #228

Merged
merged 75 commits into from
Jun 20, 2024
Merged

TSMP-PDAF Update #228

merged 75 commits into from
Jun 20, 2024

Commits on May 22, 2024

  1. dco: mention size limit for obs_filename

    @jjokella
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Commits on May 23, 2024

  1. doc: update CLM5-PDAF build-commands

    @jjokella
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  2. intf_oas3/clm5_0: update NODENAME_REGEX for JUWELS

    @jjokella
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  3. doc: updating CLM5 build and setup commands

    @jjokella
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  4. clm5 debug output of state vector, first implementation 

    - `tstartcycle`, `mype` read from C-code as input, not very elegant.
    @jjokella
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  5. bugfix: use tstartcycle

    @jjokella
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  6. clm5 debug output of obs_index_p, first implementation

    @jjokella
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Commits on May 24, 2024

  1. debug output of clm_statevec to double precision

    @jjokella
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Commits on May 29, 2024

  1. CLM5-PDAF: update setting of state vector 

    A simple iteration of grid cells as in CLM3.5 is not possible anymore.

For each grid cell, the first column of swc is added to the state
vector.
    @jjokella
    Lukas Strebel authored and jjokella committed May 29, 2024
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  2. Merge branch 'master' into jjokella-master

    @jjokella
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  3. eclm: update interface routines with clm5_0

    @jjokella
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  4. CLM5-PDAF: update setting of state vector 

    A simple iteration of grid cells as in CLM3.5 is not possible anymore.

For each grid cell, the first column of swc is added to the state
vector.
    @jjokella
    Lukas Strebel authored and jjokella committed May 29, 2024
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  5. Merge branch 'master' into jjokella-master

    @jjokella
    jjokella committed May 29, 2024
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  6. CLM5-PDAF: update setting of state vector 

    A simple iteration of grid cells as in CLM3.5 is not possible anymore.

For each grid cell, the first column of swc is added to the state
vector.
    @jjokella
    Lukas Strebel authored and jjokella committed May 29, 2024
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  7. Merge branch 'master' into jjokella-master

    @jjokella
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  8. Merge branch 'master' into jjokella-master

    @jjokella
    jjokella committed May 29, 2024
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Commits on Jun 3, 2024

  1. enkf_clm_mod_5: debug output of CLM5 index bounds

    @jjokella
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Commits on Jun 4, 2024

  1. clm5 debug output of read and set swc array

    @jjokella
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  2. clm5_debug output for h2osoi_liq and h2osoi_ice

    @jjokella
    jjokella committed Jun 4, 2024
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  3. add input mype to define_clm_statevec

    @jjokella
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  4. bugfix tstartcycle

    @jjokella
    jjokella committed Jun 4, 2024
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  5. update_clm: new indexing for updating swc array

    @jjokella
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Commits on Jun 5, 2024

  1. clm5-pdaf: state vector including SWC values from all columns

    @jjokella
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  2. bugfix double plus

    @jjokella
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  3. clm5-pdaf: index fix for multiple processors 

    `clm_begg` / `clm_begc` do not necessarily start at `1`

However, `cc` (index of the state vector) always starts at `1`.
    @jjokella
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Commits on Jun 6, 2024

  1. Input CLM:t_printensemble: time step for ensemble debug output

    @jjokella
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  2. clm5: propagate correct mype_world

    @jjokella
    jjokella committed Jun 6, 2024
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  3. eclm: adapat to changes in clm5_0 interface

    @jjokella
    jjokella committed Jun 6, 2024
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Commits on Jun 7, 2024

  1. rename clm5_init to clm_init 

    using preprocessor variable `CLMFIVE` for distinguishing
    @jjokella
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  2. separate function CLM5 / CLM3.5 function calls in wrapper 

    using `CLMFIVE`
    @jjokella
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  3. Merge branch 'master' into jjokella-master

    @jjokella
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Commits on Jun 10, 2024

  1. doc: update doc for CLM:update_swc

    @jjokella
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  2. clm3_5: include cell and pft index bounds

    @jjokella
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  3. clm5_0: style changes

    @jjokella
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  4. eclm: style changes

    @jjokella
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Commits on Jun 11, 2024

  1. clm3_5: clm_advance with debug output

    @jjokella
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  2. style updates

    @jjokella
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  3. clm5_0/eclm: set_clm_statevec only called for CLMSA

    @jjokella
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  4. clm3_5: debug output for update_clm

    @jjokella
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  5. clm5_0: style updates

    @jjokella
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  6. eclm: style updates

    @jjokella
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  7. clm3_5: style updates

    @jjokella
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  8. clm3_5: use factor 100.0 for real multiplication

    @jjokella
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  9. clm5_0/eclm: remove duplication for clmupdate_texture

    @jjokella
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  10. clm5_0/eclm: implicit none included

    @jjokella
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  11. clm5_0/eclm: dummy values for min/max of lat/lon

    @jjokella
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  12. clm3_5: clm_init with same input as for clm5_0

    @jjokella
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  13. enkfpf.par: input DA:print_obs_index 

    Switch for turning on output of the +process-local grid-index-array of
the obserations, `obs_index_p`.
    @jjokella
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Commits on Jun 12, 2024

  1. doc for enkfpf.par input CLM:update_T

    @jjokella
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  2. clm5_0: include update stubs from clm3_5 for later implementation

    @jjokella
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Commits on Jun 13, 2024

  1. style updates

    @jjokella
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  2. doc on LAI parameter array clm_paramarr

    @jjokella
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  3. updating and aligning define_clm_statevec

    @jjokella
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Commits on Jun 16, 2024

  1. small error change

    @jjokella
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  2. doc: update doc of CLM-related time stepping

    @jjokella
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  3. doc: latex style update

    @jjokella
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  4. doc: latex style update

    @jjokella
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  5. bugfix

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Commits on Jun 17, 2024

  1. clm5_0: implicit none

    @jjokella
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  2. clm3_5: stub for clmstatevec_allcol

    @jjokella
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  3. doc

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  4. clm5_0/eclm: stub for clmupdate_swc.eq.2

    @jjokella
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  5. clm5_0/eclm: stub for clmupdate_T.eq.1

    @jjokella
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  6. clm3_5 style update

    @jjokella
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  7. clm3_5: include stub for clmupdate_texture.eq.2

    @jjokella
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Commits on Jun 18, 2024

  1. style updates

    @jjokella
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  2. clm5_0/eclm: adapt iterator variable in updating swc

    @jjokella
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  3. clm3_5/clm5_0/eclm: introduce watmin_check/watmin_set 

    This is the first step towards a unified `watmin` treatmean for all
CLMs
    @jjokella
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  4. clm3_5/clm5_0/eclm: style and doc updates

    @jjokella
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  5. clm3_5: update_clm, set state vector index inside loop

    @jjokella
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  6. clm3_5: add clmt_printensemble, bugfix

    @jjokella
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  7. clm3_5/clm5_0/eclm: enkfpf.par input CLM:watmin_check 

    The input `CLM:watmin_check` defines the treatment for minimal soil
moisture checking (and setting) during `update_clm`.
    @jjokella
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  8. doc updates

    @jjokella
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Commits on Jun 20, 2024

  1. bugfix for clmt_printensemble, check against correct tstartcycle 

    Background: Integration and updating for the same DA-step happen with
different `tstartcycle`, because `tstartcycle` is updated after model
integration (or forward modelling).
    @jjokella
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  2. doc for LST equation observation operator routine

    @jjokella
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