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1. DecodeGenetics/Ratatosk DecodeGenetics/Ratatosk Public

   Hybrid error correction of long reads using colored de Bruijn graphs

   C++ 99 7

2. pmelsted/bifrost pmelsted/bifrost Public

   Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs

   C++ 208 25

3. DARRC DARRC Public

   DARRC is a new alignment-free and reference-free compression method that addresses the problem of pan-genome compression by encoding the sequences of a pan-genome as a guided de Bruijn Graph. The n…

   C 7 2

4. BloomFilterTrie BloomFilterTrie Public

   An alignment-free, reference-free and incremental data structure for colored de Bruijn graph with application to pan-genome indexing.

   C 43 6

5. BlastGraph BlastGraph Public

   BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented graph and a set of query sequences, it detects paths in the…

   12