A tool to view biologic informations.
This tool, shows biologic informations, such as, GC content, width and dinucleotides, using Fasta files. The user can provide up to 10 Fasta files.
Vitor Gregorio - [email protected];
- Alexandre Rossi Paschoal - [email protected];
Operating system(s): Linux/Unix or similar
Programming language: Python3
Library: Biopython, Matplotlib
License: GNU GPL
In this example, there are six fasta files in the same folder. The user need to specify the number of files (-N), the fasta files should be in the same folder as PlotBio.py and dinucleotideo.py. The fasta files should be separated by "_ ".
python3 PlotBio.py -N 6 Arabidopsis_thaliana_GreeNC.fasta Arabidopsis_thaliana_CANTATA.fasta Oryza_sativa_Japonica_Group_GreeNC.fasta Oryza_sativa_Japonica_Group_CANTATA.fasta Zea_mays_GreeNC.fasta Zea_mays_CANTATA.fasta
The fasta files were get from CANTATAdb (http://cantata.amu.edu.pl/) and GreeNC (http://greenc.sciencedesigners.com/wiki/Main_Page)