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v1.2.1

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@maschon0 maschon0 released this 25 Sep 15:06
· 5 commits to master since this release

Bugfixes for new softclipping behavior and splice junction filtering.

  • In v1.2.0 the filter --max_intron was incorrectly implemented in bookend condense, producing a crash
  • Default behavior for bookend elr --data_type ONT now assumes start and end tags on all reads
  • bookend elr now does not require softclipping to recognize a start tag passed in the read name or with the argument -s
  • Swapped bookend elr --remove_noncanonical for --allow_noncanonical, making discarding noncanonical splice junctions default behavior