Expose version and git hash

Display the git commit hash and version in the footer.
Additionally modify the Dockerfile to expose
thse information as ARGs and ENVs.
Remove the Google API key from the code and pass it in as a parameter.

Dockerfile

@@ -1,19 +1,20 @@
-FROM maven:3.3.3-jdk-8 as maven_builder
+ARG GIT_BRANCH
+ARG GIT_COMMIT
+ARG SOURCE_BRANCH
+ARG SOURCE_COMMIT
+ARG BUILD_NUMBER
+ARG BUILD_URL
 
+FROM maven:3.3.3-jdk-8 as maven_builder
 RUN mkdir -p /code/src
-
 WORKDIR /code/src
-
 COPY src/pom.xml .
 COPY src/genophenbrowser-server/pom.xml genophenbrowser-server/
 COPY src/genophenbrowser-shared/pom.xml genophenbrowser-shared/
 COPY src/genophenbrowser-client/pom.xml genophenbrowser-client/
 RUN ["mvn","de.qaware.maven:go-offline-maven-plugin:resolve-dependencies","verify", "clean","-B", "--fail-never"]
-
 COPY src /code/src
-
 RUN ["mvn", "clean", "package"]
-
 RUN mvn org.apache.maven.plugins:maven-help-plugin:2.1.1:evaluate -Dexpression=project.version | grep -v '\[' | tail -n 1 > version
 RUN export VERSION=$(cat version); cp genophenbrowser-server/target/genophenbrowser-server-${VERSION}.war /root/ROOT.war
 
@@ -42,3 +43,15 @@ USER gwaportal
 RUN cp $JETTY_HOME/lib/jetty-proxy*jar $JETTY_BASE/lib/ext
 RUN java -jar "$JETTY_HOME/start.jar" --add-to-startd=servlets
 COPY --chown=gwaportal:gwaportal bioportal-ontology-detail.cache ProgramData/cache/bioportal-ontology-detail.cache
+ARG GIT_BRANCH
+ARG GIT_COMMIT
+ARG SOURCE_BRANCH
+ARG SOURCE_COMMIT
+ARG BUILD_NUMBER
+ARG BUILD_URL
+ENV VERSION ${GIT_BRANCH:-$SOURCE_BRANCH}
+ENV COMMIT_HASH ${GIT_COMMIT:-$SOURCE_COMMIT}
+ENV BUILD_NUMBER $BUILD_NUMBER
+ENV BUILD_URL $BUILD_URL
+RUN echo ${VERSION}
+

Jenkinsfile

@@ -1,6 +1,5 @@
 def jobsMapping = [
-  tags: [jobName:"App GWAPortal", jobTags: "reload", extraVars: "app_generic_image_tag: latest"],
-  master: [jobName:"App GWAPortal", jobTags: "reload", extraVars: "app_generic_image_tag: master"]
+  tags: [jobName:"App GWAPortal", jobTags: "reload", extraVars: "app_generic_image_tag: latest"]
 ]
 
 buildDockerImage([

src/genophenbrowser-client/src/main/java/com/gmi/nordborglab/browser/client/bootstrap/BootstrapperImpl.java

@@ -121,7 +121,7 @@ protected void handleSuccess() {
         };
         /* FIXME https://code.google.com/p/gwt-charts/issues/detail?id=53 */
         ChartLoader chartLoader = new ChartLoader(ChartPackage.CORECHART, ChartPackage.ORGCHART, ChartPackage.GEOCHART, ChartPackage.MOTIONCHART);
-        chartLoader.setMapsApiKey("AIzaSyADR9bZKW2zh8GcDHRVWZOdZafVg6U86Hg");
+        chartLoader.setMapsApiKey(getMapsApiKey());
         // FIXME Required because newer version will cause a JSON parse errro. This needs to be investigated on the backend
         chartLoader.setVersion("45.2");
         chartLoader.loadApi(chartsRunnable);
@@ -166,6 +166,21 @@ public static String getContactEmail() {
         return data.get("contactEmail");
     }
 
+    public static String getVersion() {
+        Dictionary data = Dictionary.getDictionary("appData");
+        return data.get("version"); 
+    }
+
+    public static String getCommitHash() {
+        Dictionary data = Dictionary.getDictionary("appData");
+        return data.get("commitHash"); 
+    }
+
+    public static String getMapsApiKey() {
+        Dictionary data = Dictionary.getDictionary("appData");
+        return data.get("mapsApiKey"); 
+    }
+
     public static LinkedHashSet<String> getChromosomes() {
         Dictionary data = Dictionary.getDictionary("appData");
         return Sets.newLinkedHashSet(Splitter.on(",").split(data.get("chromosomes")));

src/genophenbrowser-client/src/main/java/com/gmi/nordborglab/browser/client/mvp/ApplicationView.java

@@ -1,5 +1,6 @@
 package com.gmi.nordborglab.browser.client.mvp;
 
+import com.gmi.nordborglab.browser.client.bootstrap.BootstrapperImpl;
 import com.gmi.nordborglab.browser.client.mvp.ApplicationPresenter.MENU;
 import com.gmi.nordborglab.browser.client.resources.MainResources;
 import com.gmi.nordborglab.browser.client.security.CurrentUser;
@@ -9,6 +10,7 @@
 import com.gmi.nordborglab.browser.client.util.DateUtils;
 import com.gmi.nordborglab.browser.shared.proxy.AppUserProxy;
 import com.gmi.nordborglab.browser.shared.proxy.UserNotificationProxy;
+import com.google.gwt.dom.client.AnchorElement;
 import com.google.gwt.dom.client.DivElement;
 import com.google.gwt.dom.client.Element;
 import com.google.gwt.dom.client.ImageElement;
@@ -31,6 +33,7 @@
 import com.google.gwt.user.client.ui.Label;
 import com.google.gwt.user.client.ui.SimpleLayoutPanel;
 import com.google.gwt.user.client.ui.Widget;
+import com.google.gwt.safehtml.shared.UriUtils;
 import com.google.inject.Inject;
 import com.gwtplatform.mvp.client.ViewWithUiHandlers;
 import com.gwtplatform.mvp.client.proxy.PlaceManager;
@@ -88,6 +91,8 @@ interface MyStyle extends CssResource {
     SpanElement arrorIcon;
     @UiField
     SpanElement notifyBubble;
+    @UiField
+    AnchorElement versionLink;
 
     private final Favico favIco;
 
@@ -150,6 +155,15 @@ public void f(Element e) {
                 notificationbar.stop().fadeTo(500, 0);
             }
         });
+        String version = BootstrapperImpl.getVersion();
+        String commitHash = BootstrapperImpl.getCommitHash();
+        if (commitHash != "") {
+            versionLink.setHref(UriUtils.fromString("https://github.com/Gregor-Mendel-Institute/GWA-Portal/commit/" + commitHash).asString());
+            if (version == "") {
+                version = commitHash.substring(0, Math.min(7, commitHash.length()));
+            }
+            versionLink.setInnerText(version);
+        }
     }
 
     @Override

src/genophenbrowser-client/src/main/java/com/gmi/nordborglab/browser/client/mvp/ApplicationView.ui.xml

@@ -96,6 +96,14 @@
             height: 3.423em;
         }
 
+        .footer_version {
+            float: right;
+            vertical-align: middle;
+            padding-top: 20px;
+            font-size: 13px;
+            color: #999;
+        }
+
         .footer_items {
             float: left;
             line-height: 3.423em;
@@ -386,6 +394,8 @@
         </g:center>
         <g:south size="4.423">
             <g:HTMLPanel addStyleNames="{style.footer}" ui:field="footerPanel">
+                <div class="{style.footer_version}">Version: <a target="_blank" ui:field="versionLink">N/A</a>
+                </div>
                 <div ui:field="footerContentPanel">
                     <div class="{style.footer_content}">
                         <div class="{style.footer_items}">

src/genophenbrowser-server/CONFIG/application_PROFILE.sample.properties

@@ -14,5 +14,6 @@ GENOME.chrlengths=30429953,19701870,23467451,18578708,26992130
 GENOME.chromosomes=1,2,3,4,5
 GA.trackingid={GA.TRACKERID}
 SITE.contactemail=[email protected]
+SITE.mapsApiKey={API KEY for MAPS}
 HDF5_SERVER={HDF5_SERVER}
 GENE.info_url=https://apps.araport.org/thalemine/portal.do?externalids={0}

src/genophenbrowser-server/src/main/java/com/gmi/nordborglab/browser/server/controller/MainController.java

@@ -26,6 +26,15 @@ public class MainController {
     @Value("${GENOME.chromosomes}")
     private String chromosomes = "";
 
+    @Value("#{environment.VERSION}")
+    private String version;
+
+    @Value("#{environment.COMMIT_HASH}")
+    private String commitHash;
+
+    @Value("${SITE.mapsApiKey}")
+    private String mapsApiKey;
+
     @RequestMapping(method =  {RequestMethod.GET, RequestMethod.HEAD})
     public ModelAndView index() {
 
@@ -35,6 +44,10 @@ public ModelAndView index() {
         result.addObject("contactEmail", contactEmail);
         result.addObject("geneInfoUrl",geneInfoUrl);
         result.addObject("chromosomes", chromosomes);
+        result.addObject("version", version);
+        result.addObject("commitHash", commitHash);
+        result.addObject("mapsApiKey", mapsApiKey);
+
         return result;
     }
 }

src/genophenbrowser-server/src/main/webapp/WEB-INF/jsp/index.jsp

@@ -163,7 +163,10 @@
             'geneInfoUrl': '${geneInfoUrl}',
             'gaTrackingId': '${gaTrackingId}',
             'contactEmail': '${contactEmail}',
-            'chromosomes': '${chromosomes}'
+            'chromosomes': '${chromosomes}',
+            'version': '${version}',
+            'commitHash': '${commitHash}',
+            'mapsApiKey': '${mapsApiKey}',
         };
         <%@ include file="/browser/browser.nocache.js" %>
     </script>