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uniref100 external record links to uniprot.org are broken, getting 404s #55

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robert102 opened this issue Nov 20, 2024 · 2 comments
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e.g. at /data/uniref100/106975085/ external URL is:
https://www.uniprot.org/uniref/UniRef100_A0A4Q5W1V4

@robert102 robert102 self-assigned this Nov 27, 2024
@robert102 robert102 added the bug Something isn't working label Nov 27, 2024
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robert102 commented Nov 27, 2024

So A0A4Q5W1V4 (the example above) got de-listed by uniprot, so problem here, we're just out of date. Many ur100 links resolve fine, so the URL formatting is good.

Now, e.g. http://localhost:8000/data/uniref100/129620947/ has another issue, the A0A1B3PZB3 is member (but not seed & representative) of 100% cluster UniRef100_G4CXR9. So, our link fails but we don't have G4CXR9 in UMRAD. Is this a data-model issue or are we just out-of-date?

@robert102 robert102 added help wanted Extra attention is needed question Further information is requested labels Nov 27, 2024
@robert102 robert102 removed help wanted Extra attention is needed question Further information is requested labels Dec 12, 2024
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Issue will be addressed at the time when the UMRAD part of GLAMR gets updated (sometime in 2025?)

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