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Geo-omics

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  1. scripts scripts Public

    Metagenomic pipeline and other general scripts used in the lab.

    Perl 35 22

  2. GLAMR_omics_pipelines GLAMR_omics_pipelines Public

    Multi-omics pipeline for the GLAMR database

    Python 6

  3. snakemake_profiles snakemake_profiles Public

    Snakemake profiles for the lab servers and Great Lakes HPC

    Python 1

  4. omics_working_group omics_working_group Public

    HTML 1

  5. Characterizing-individual-Microcystis-colony-phycosphere-communities Characterizing-individual-Microcystis-colony-phycosphere-communities Public

    This repository holds all metadata tables, scripts, and R code for the bioinformatic and statistical analysis associated with the manuscript: Individual Microcystis colonies harbor distinct bacteri…

    Shell

  6. Heterotrophic-Bacteria-Dominate-Catalase-Expression-During-Microcystis-Blooms Heterotrophic-Bacteria-Dominate-Catalase-Expression-During-Microcystis-Blooms Public

    This repository holds all analysis code and input files for the manuscript in prep: "Heterotrophic bacteria dominate catalase expression during Microcystis blooms."

    HTML

Repositories

Showing 10 of 17 repositories
  • 2024-25-working-group Public

    Code from the 2024-2025 omics working group examples

    Geo-omics/2024-25-working-group’s past year of commit activity
    HTML 0 0 0 0 Updated Dec 17, 2024
  • mibios Public
    Geo-omics/mibios’s past year of commit activity
    Python 0 MIT 1 20 0 Updated Dec 17, 2024
  • GLAMR-ops Public

    Things to deploy GLAMR

    Geo-omics/GLAMR-ops’s past year of commit activity
    Python 0 0 0 0 Updated Dec 13, 2024
  • GLAMR_omics_pipelines Public

    Multi-omics pipeline for the GLAMR database

    Geo-omics/GLAMR_omics_pipelines’s past year of commit activity
    Python 6 0 6 0 Updated Nov 25, 2024
  • WinamGulf_MetaG_2022-2023 Public

    This repository hosts the code and data tables necessary for the analysis in Hart et al. 2024 of metagenomic data collected from the Winam Gulf, Lake Victoria, Kenya in 2022 and 2023 through NSF IRES Funding.

    Geo-omics/WinamGulf_MetaG_2022-2023’s past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated Oct 3, 2024
  • GVHD_mouse_metagenomes Public
    Geo-omics/GVHD_mouse_metagenomes’s past year of commit activity
    Python 0 0 0 0 Updated Sep 19, 2024
  • H2O2-Incubation-Experiments Public

    R code and input tables that were used to analyze data from H2O2 incubation experiments with western Lake Erie water

    Geo-omics/H2O2-Incubation-Experiments’s past year of commit activity
    0 0 0 0 Updated Sep 5, 2024
  • omics_working_group Public
    Geo-omics/omics_working_group’s past year of commit activity
    HTML 1 0 0 0 Updated Aug 14, 2024
  • snakemake_profiles Public

    Snakemake profiles for the lab servers and Great Lakes HPC

    Geo-omics/snakemake_profiles’s past year of commit activity
    Python 1 0 0 0 Updated Jul 31, 2024
  • WLE_Saxitoxin_ADA Public
    Geo-omics/WLE_Saxitoxin_ADA’s past year of commit activity
    Python 0 0 1 0 Updated Jul 11, 2024
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