Skip to content

Issues: GenomicMedLab/cool-seq-tool

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

37 Open 130 Closed
37 Open 130 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

genomic_to_tx_segment should check if a MANE Select transcript is in UTA bug Something isn't working priority:high High priority
#377 opened Nov 12, 2024 by jarbesfeld
1
@jarbesfeld
Add warning for when a coordinate occurs outside of 100 base pairs of the start/end of a transcript enhancement New feature or request priority:medium Medium priority
#372 opened Sep 26, 2024 by katiestahl
@jarbesfeld
Add parameter for using GRCh37 sequences enhancement New feature or request priority:medium Medium priority
#371 opened Sep 25, 2024 by jarbesfeld
1
Ensure that start position does not exceed end position for a transcript segment bug Something isn't working priority:medium Medium priority
#366 opened Sep 5, 2024 by jarbesfeld
@korikuzma
Break up _genomic_to_tx_segment into smaller methods priority:low Low priority technical debt A feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup"
#362 opened Aug 20, 2024 by korikuzma
Choosing the Correct Adjacent Exon along Exon Boundaries bug Something isn't working priority:medium Medium priority
#361 opened Aug 20, 2024 by jarbesfeld
3
Add information about Ensembl transcripts to docs documentation Improvements or additions to documentation priority:low Low priority
#342 opened Jul 31, 2024 by korikuzma
Add coordinate type to usage docs documentation Improvements or additions to documentation priority:low Low priority
#341 opened Jul 31, 2024 by korikuzma
@jsstevenson
Move pydantic models to their respective module priority:low Low priority technical debt A feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup"
#336 opened Jul 31, 2024 by korikuzma
SeqRepoAccess should support SeqRepoRESTDataProxy enhancement New feature or request priority:medium Medium priority stale-exempt
#307 opened Jul 5, 2024 by korikuzma
2
Consider alternatives to custom genomic table priority:low Low priority technical debt A feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup"
#285 opened Apr 30, 2024 by korikuzma
1
Allow initialization of writeable SeqRepo instance enhancement New feature or request priority:low Low priority
#282 opened Apr 8, 2024 by jsstevenson
2
Resolve S608 errors priority:medium Medium priority technical debt A feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup"
#269 opened Feb 13, 2024 by korikuzma
2
Reduce the number of tests priority:low Low priority test Changes to test code only
#255 opened Jan 10, 2024 by korikuzma
1
Remove unused methods/functions priority:low Low priority technical debt A feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup"
#246 opened Dec 27, 2023 by korikuzma
@korikuzma
1
Better naming in UTA database module priority:low Low priority technical debt A feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup"
#245 opened Dec 27, 2023 by korikuzma
1
Revisit PostgreSQL connection code performance Improvements to performance priority:medium Medium priority stale-exempt
#239 opened Dec 27, 2023 by jsstevenson
2
Gene name inputs enhancement New feature or request stale-exempt technical debt A feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup"
#232 opened Dec 26, 2023 by jsstevenson
1
Clean up ExonGenomicCoordsMapper epic A collection of issues priority:medium Medium priority technical debt A feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup"
#224 opened Dec 8, 2023 by korikuzma
@korikuzma
12
Return VRS objects where we can priority:low Low priority technical debt A feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup"
#219 opened Nov 3, 2023 by korikuzma
2
Use enum for chromosome parameters enhancement New feature or request priority:low Low priority
#218 opened Nov 3, 2023 by jsstevenson
3
Validate exon offsets in transcript_to_genomic_coordinates() enhancement New feature or request priority:medium Medium priority stale-exempt
#184 opened Aug 7, 2023 by jsstevenson
5
fix condition in get_liftover on if liftover succeeded bug Something isn't working priority:medium Medium priority
#180 opened Aug 2, 2023 by korikuzma
@korikuzma
2
Negative mane transcript positions stale-exempt
#179 opened Aug 1, 2023 by korikuzma
1
Add method to SeqRepoAcces to validate reference sequences enhancement New feature or request priority:low Low priority stale-exempt
#173 opened Jul 18, 2023 by korikuzma
1
ProTip! Mix and match filters to narrow down what you’re looking for.