This repository is meant to collaborate on the data sanitation process. Following is a list of the files/data in this repository: (Please modify this file if you decide to change something.)
-
convertCoord.py
is a Python script that goes through an existing GFF3 file and fixes issues such as naming and coordinate locations. -
convertCoord.sh
is a Bash script that wrapsconvertCoord.py
and scripts the process of running that script for all GFF3 files in a directory. -
preprocessPilerCR.sh
is a Bash script for for Fixing the PilerCR output. -
runPipeline.sh
is a Bash script for running the whole data clean up pipeline