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@Gabaldonlab

Gabaldon lab

Github repository of Gabaldon lab

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  1. redundans redundans Public

    Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

    C++ 158 20

  2. perSVade perSVade Public

    perSVade: personalized Structural Variation detection

    Python 40 5

  3. jloh jloh Public

    A tool to extract LOH blocks from VCF, BAM and FASTA data

    Python 24 3

  4. haplotypo haplotypo Public

    This is the Haplotypo repository

    Python 20 6

Repositories

Showing 10 of 57 repositories
  • perSVade Public

    perSVade: personalized Structural Variation detection

    Gabaldonlab/perSVade’s past year of commit activity
    Python 40 GPL-3.0 5 0 0 Updated Sep 9, 2025
  • brlens Public
    Gabaldonlab/brlens’s past year of commit activity
    Python 0 0 0 0 Updated Jul 17, 2025
  • structural_phylome Public

    Compute a sequence and structure based phylome based on uniprot proteomes.

    Gabaldonlab/structural_phylome’s past year of commit activity
    Python 6 GPL-3.0 1 0 0 Updated Jul 8, 2025
  • meTAline Public

    A snakemake pipeline for metagenomics analysis, it facilitates an efficient workflow to preprocess short reads metagenomics data: from read trimming and filtering, through host read subtraction to taxonomic classification using both k-mer and gene marker-based approaches, and functional profiling of the samples.

    Gabaldonlab/meTAline’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Jul 7, 2025
  • crossmapper Public

    Crossmapper software

    Gabaldonlab/crossmapper’s past year of commit activity
    Python 9 GPL-3.0 1 3 0 Updated Jun 13, 2025
  • B-GUT-decontamination Public
    Gabaldonlab/B-GUT-decontamination’s past year of commit activity
    Python 0 0 0 0 Updated May 23, 2025
  • ghost_transfers Public Forked from moisesbernabeu/ghost_transfers
    Gabaldonlab/ghost_transfers’s past year of commit activity
    R 0 2 0 0 Updated Apr 24, 2025
  • redundans Public

    Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

    Gabaldonlab/redundans’s past year of commit activity
    C++ 158 GPL-3.0 20 0 0 Updated Apr 14, 2025
  • Q-PHAST Public
    Gabaldonlab/Q-PHAST’s past year of commit activity
    Python 0 2 0 0 Updated Mar 19, 2025
  • singularity-technical-seminar Public

    Technical seminar on containerizing bioinformatics pipelines 📦 🧬 💻 👩🏻‍💻 🧪

    Gabaldonlab/singularity-technical-seminar’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Mar 4, 2025
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