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@GMOD

Generic Model Organism Database Project

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  1. Chado Chado Public

    the GMOD database schema

    PLpgSQL 38 25

  2. jbrowse-components jbrowse-components Public

    Source code for JBrowse 2, a modern React-based genome browser

    TypeScript 211 63

  3. jbrowse jbrowse Public

    JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.

    JavaScript 464 199

  4. Apollo Apollo Public

    Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.

    Groovy 129 85

Repositories

Showing 10 of 101 repositories
  • abortable-promise-cache Public

    add AbortController support to a cache of async requests

    GMOD/abortable-promise-cache’s past year of commit activity
    TypeScript 6 MIT 2 1 5 Updated Dec 15, 2024
  • Apollo3 Public

    JBrowse 2 plugin for editing annotations on an Apollo server

    GMOD/Apollo3’s past year of commit activity
    TypeScript 7 Apache-2.0 4 57 13 Updated Dec 15, 2024
  • cram-js Public

    Read CRAM v3 and v2 in node or in the browser

    GMOD/cram-js’s past year of commit activity
    TypeScript 18 MIT 9 7 3 Updated Dec 15, 2024
  • jbrowse-components Public

    Source code for JBrowse 2, a modern React-based genome browser

    GMOD/jbrowse-components’s past year of commit activity
    TypeScript 211 Apache-2.0 63 301 (5 issues need help) 17 Updated Dec 14, 2024
  • bgzf-filehandle Public

    Nodejs filehandle for reading bgzip+.gzi compressed files

    GMOD/bgzf-filehandle’s past year of commit activity
    TypeScript 7 MIT 4 4 3 Updated Dec 13, 2024
  • generic-filehandle Public

    use a subset of the NodeJS promise-based file handle API to access both local and remote files

    GMOD/generic-filehandle’s past year of commit activity
    TypeScript 4 6 4 3 Updated Dec 12, 2024
  • twobit-js Public

    Read .2bit files with pure JS. Works in node or webpack.

    GMOD/twobit-js’s past year of commit activity
    TypeScript 4 MIT 2 0 0 Updated Dec 12, 2024
  • bbi-js Public

    Parser for bigwig and bigbed files

    GMOD/bbi-js’s past year of commit activity
    TypeScript 8 MIT 6 8 0 Updated Dec 12, 2024
  • indexedfasta-js Public

    Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi

    GMOD/indexedfasta-js’s past year of commit activity
    TypeScript 12 MIT 4 0 1 Updated Dec 12, 2024
  • tabix-js Public

    Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser

    GMOD/tabix-js’s past year of commit activity
    TypeScript 14 MIT 5 2 0 Updated Dec 12, 2024
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