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merge fix
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Pavel Tomin authored and Pavel Tomin committed Jan 23, 2025
1 parent ba262ba commit 6be1912
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Showing 10 changed files with 58 additions and 92 deletions.
2 changes: 0 additions & 2 deletions src/coreComponents/physicsSolvers/fluidFlow/FlowSolverBase.cpp
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Expand Up @@ -185,8 +185,6 @@ void FlowSolverBase::registerDataOnMesh( Group & meshBodies )
if( m_isThermal )
{
subRegion.registerField< fields::flow::energy >( getName() );
subRegion.registerField< fields::flow::dEnergy_dPressure >( getName() );
subRegion.registerField< fields::flow::dEnergy_dTemperature >( getName() );
subRegion.registerField< fields::flow::energy_n >( getName() );
}
} );
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8 changes: 0 additions & 8 deletions src/coreComponents/physicsSolvers/fluidFlow/FlowSolverBaseFields.hpp
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Original file line number Diff line number Diff line change
Expand Up @@ -257,14 +257,6 @@ DECLARE_FIELD( energy_n,
NO_WRITE,
"Energy at the previous converged time step" );

DECLARE_FIELD( dEnergy,
"dEnergy",
array1d< real64 >, // TODO: change to array2d< real64 >
0,
NOPLOT,
NO_WRITE,
"Derivatives of energy" );

}

}
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56 changes: 30 additions & 26 deletions src/coreComponents/physicsSolvers/fluidFlow/SinglePhaseBase.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -97,7 +97,12 @@ void SinglePhaseBase::registerDataOnMesh( Group & meshBodies )

subRegion.registerField< fields::flow::mass >( getName() );
subRegion.registerField< fields::flow::mass_n >( getName() );
subRegion.registerField< fields::flow::dMass >( getName() ).reference().resizeDimension< 1 >( m_numDofPerCell );;
subRegion.registerField< fields::flow::dMass >( getName() ).reference().resizeDimension< 1 >( m_numDofPerCell );

if( m_isThermal )
{
subRegion.registerField< fields::flow::dEnergy >( getName() ).reference().resizeDimension< 1 >( m_numDofPerCell );
}
} );

elemManager.forElementSubRegions< SurfaceElementSubRegion >( regionNames,
Expand Down Expand Up @@ -256,9 +261,11 @@ void SinglePhaseBase::updateMass( ElementSubRegionBase & subRegion ) const
{
GEOS_MARK_FUNCTION;

using DerivOffset = constitutive::singlefluid::DerivativeOffsetC< 1 >; // TODO check if this is correct

arrayView1d< real64 > const mass = subRegion.getField< fields::flow::mass >();
arrayView1d< real64 > const dMass_dP = subRegion.getField< fields::flow::dMass_dPressure >();
arrayView1d< real64 > const mass_n = subRegion.getField< fields::flow::mass_n >();
arrayView2d< real64, constitutive::singlefluid::USD_FLUID > const dMass = subRegion.getField< fields::flow::dMass >();

CoupledSolidBase const & porousSolid =
getConstitutiveModel< CoupledSolidBase >( subRegion, subRegion.template getReference< string >( viewKeyStruct::solidNamesString() ) );
Expand All @@ -267,19 +274,19 @@ void SinglePhaseBase::updateMass( ElementSubRegionBase & subRegion ) const
arrayView2d< real64 const > const porosity_n = porousSolid.getPorosity_n();

arrayView1d< real64 const > const volume = subRegion.getElementVolume();
arrayView1d< real64 > const deltaVolume = subRegion.getField< fields::flow::deltaVolume >();
arrayView1d< real64 const > const deltaVolume = subRegion.getField< fields::flow::deltaVolume >();

SingleFluidBase & fluid =
getConstitutiveModel< SingleFluidBase >( subRegion, subRegion.getReference< string >( viewKeyStruct::fluidNamesString() ) );
arrayView2d< real64 const, singlefluid::USD_FLUID > const density = fluid.density();
arrayView2d< real64 const, singlefluid::USD_FLUID > const density_n = fluid.density_n();
arrayView2d< real64 const > const dDensity_dP = fluid.dDensity_dPressure();
arrayView3d< real64 const, constitutive::singlefluid::USD_FLUID_DER > const dDensity = fluid.dDensity();

forAll< parallelDevicePolicy<> >( subRegion.size(), [=] GEOS_HOST_DEVICE ( localIndex const ei )
{
real64 const vol = volume[ei] + deltaVolume[ei];
mass[ei] = porosity[ei][0] * density[ei][0] * vol;
dMass_dP[ei] = ( dPorosity_dP[ei][0] * density[ei][0] + porosity[ei][0] * dDensity_dP[ei][0] ) * vol;
dMass[ei][DerivOffset::dP] = ( dPorosity_dP[ei][0] * density[ei][0] + porosity[ei][0] * dDensity[ei][0][DerivOffset::dP] ) * vol;
if( isZero( mass_n[ei] ) ) // this is a hack for hydrofrac cases
{
mass_n[ei] = porosity_n[ei][0] * volume[ei] * density_n[ei][0]; // initialize newly created element mass
Expand All @@ -288,13 +295,11 @@ void SinglePhaseBase::updateMass( ElementSubRegionBase & subRegion ) const

if( m_isThermal )
{
arrayView1d< real64 > const dMass_dT = subRegion.getField< fields::flow::dMass_dTemperature >();
arrayView2d< real64 const > const dPorosity_dT = porousSolid.getDporosity_dTemperature();
arrayView2d< real64 const > const dDensity_dT = fluid.dDensity_dTemperature();
forAll< parallelDevicePolicy<> >( subRegion.size(), [=] GEOS_HOST_DEVICE ( localIndex const ei )
{
real64 const vol = volume[ei] + deltaVolume[ei];
dMass_dT[ei] = ( dPorosity_dT[ei][0] * density[ei][0] + porosity[ei][0] * dDensity_dT[ei][0] ) * vol;
dMass[ei][DerivOffset::dT] = ( dPorosity_dT[ei][0] * density[ei][0] + porosity[ei][0] * dDensity[ei][0][DerivOffset::dT] ) * vol;
} );
}
}
Expand All @@ -303,12 +308,13 @@ void SinglePhaseBase::updateEnergy( ElementSubRegionBase & subRegion ) const
{
GEOS_MARK_FUNCTION;

using DerivOffset = constitutive::singlefluid::DerivativeOffsetC< 1 >;

arrayView1d< real64 > const energy = subRegion.getField< fields::flow::energy >();
arrayView1d< real64 > const dEnergy_dP = subRegion.getField< fields::flow::dEnergy_dPressure >();
arrayView1d< real64 > const dEnergy_dT = subRegion.getField< fields::flow::dEnergy_dTemperature >();
arrayView2d< real64, constitutive::singlefluid::USD_FLUID > const dEnergy = subRegion.getField< fields::flow::dEnergy >();

arrayView1d< real64 const > const volume = subRegion.getElementVolume();
arrayView1d< real64 > const deltaVolume = subRegion.getField< fields::flow::deltaVolume >();
arrayView1d< real64 const > const deltaVolume = subRegion.getField< fields::flow::deltaVolume >();

CoupledSolidBase const & porousSolid =
getConstitutiveModel< CoupledSolidBase >( subRegion, subRegion.template getReference< string >( viewKeyStruct::solidNamesString() ) );
Expand All @@ -322,28 +328,26 @@ void SinglePhaseBase::updateEnergy( ElementSubRegionBase & subRegion ) const
getConstitutiveModel< SingleFluidBase >( subRegion, subRegion.getReference< string >( viewKeyStruct::fluidNamesString() ) );
arrayView2d< real64 const, constitutive::singlefluid::USD_FLUID > const density = fluid.density();
arrayView2d< real64 const, constitutive::singlefluid::USD_FLUID > const fluidInternalEnergy = fluid.internalEnergy();
arrayView2d< real64 const > const dDensity_dP = fluid.dDensity_dPressure();
arrayView2d< real64 const > const dDensity_dT = fluid.dDensity_dTemperature();
arrayView2d< real64 const > const dFluidInternalEnergy_dP = fluid.dInternalEnergy_dPressure();
arrayView2d< real64 const > const dFluidInternalEnergy_dT = fluid.dInternalEnergy_dTemperature();
arrayView3d< real64 const, constitutive::singlefluid::USD_FLUID_DER > const dDensity = fluid.dDensity();
arrayView3d< real64 const, constitutive::singlefluid::USD_FLUID_DER > const dFluidInternalEnergy = fluid.dInternalEnergy();

forAll< parallelDevicePolicy<> >( subRegion.size(), [=] GEOS_HOST_DEVICE ( localIndex const ei )
{
real64 const vol = volume[ei] + deltaVolume[ei];
energy[ei] = vol *
( porosity[ei][0] * density[ei][0] * fluidInternalEnergy[ei][0] +
( 1.0 - porosity[ei][0] ) * rockInternalEnergy[ei][0] );
dEnergy_dP[ei] = vol *
( dPorosity_dP[ei][0] * density[ei][0] * fluidInternalEnergy[ei][0] +
porosity[ei][0] * dDensity_dP[ei][0] * fluidInternalEnergy[ei][0] +
porosity[ei][0] * density[ei][0] * dFluidInternalEnergy_dP[ei][0] -
dPorosity_dP[ei][0] * rockInternalEnergy[ei][0] );
dEnergy_dT[ei] = vol *
( dPorosity_dT[ei][0] * density[ei][0] * fluidInternalEnergy[ei][0] +
porosity[ei][0] * dDensity_dT[ei][0] * fluidInternalEnergy[ei][0] +
porosity[ei][0] * density[ei][0] * dFluidInternalEnergy_dT[ei][0] -
dPorosity_dT[ei][0] * rockInternalEnergy[ei][0] +
( 1.0 - porosity[ei][0] ) * dRockInternalEnergy_dT[ei][0] );
dEnergy[ei][DerivOffset::dP] = vol *
( dPorosity_dP[ei][0] * density[ei][0] * fluidInternalEnergy[ei][0] +
porosity[ei][0] * dDensity[ei][0][DerivOffset::dP] * fluidInternalEnergy[ei][0] +
porosity[ei][0] * density[ei][0] * dFluidInternalEnergy[ei][0][DerivOffset::dP] -
dPorosity_dP[ei][0] * rockInternalEnergy[ei][0] );
dEnergy[ei][DerivOffset::dT] = vol *
( dPorosity_dT[ei][0] * density[ei][0] * fluidInternalEnergy[ei][0] +
porosity[ei][0] * dDensity[ei][0][DerivOffset::dT] * fluidInternalEnergy[ei][0] +
porosity[ei][0] * density[ei][0] * dFluidInternalEnergy[ei][0][DerivOffset::dT] -
dPorosity_dT[ei][0] * rockInternalEnergy[ei][0] +
( 1.0 - porosity[ei][0] ) * dRockInternalEnergy_dT[ei][0] );
} );
}

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8 changes: 8 additions & 0 deletions src/coreComponents/physicsSolvers/fluidFlow/SinglePhaseBaseFields.hpp
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Expand Up @@ -85,6 +85,14 @@ DECLARE_FIELD( dMobility,
NO_WRITE,
"dMobility" );

DECLARE_FIELD( dEnergy,
"dEnergy",
array2dLayoutFluid,
0,
NOPLOT,
NO_WRITE,
"Derivatives of energy" );

}

}
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4 changes: 2 additions & 2 deletions src/coreComponents/physicsSolvers/fluidFlow/kernels/singlePhase/AccumulationKernels.hpp
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Original file line number Diff line number Diff line change
Expand Up @@ -151,7 +151,7 @@ class AccumulationKernel
stack.localResidual[0] = m_mass[ei] - m_mass_n[ei];

// Derivative of residual wrt to pressure in the cell
stack.localJacobian[0][0] = m_dMass[ei][0][DerivOffset::dP];
stack.localJacobian[0][0] = m_dMass[ei][DerivOffset::dP];

// Customize the kernel with this lambda
kernelOp();
Expand Down Expand Up @@ -218,7 +218,7 @@ class AccumulationKernel
/// View on mass
arrayView1d< real64 const > const m_mass;
arrayView1d< real64 const > const m_mass_n;
arrayView2d< real64 const > const m_dMass; // TODO check...
arrayView2d< real64 const, constitutive::singlefluid::USD_FLUID > const m_dMass;

/// View on the local CRS matrix
CRSMatrixView< real64, globalIndex const > const m_localMatrix;
Expand Down
9 changes: 3 additions & 6 deletions ...oreComponents/physicsSolvers/fluidFlow/kernels/singlePhase/ThermalAccumulationKernels.hpp
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Expand Up @@ -48,6 +48,7 @@ class AccumulationKernel : public singlePhaseBaseKernels::AccumulationKernel< SU
using Base::m_elemGhostRank;
using Base::m_localMatrix;
using Base::m_localRhs;
using Base::m_dMass;

/// Note: Derivative lineup only supports dP & dT, not component terms
static constexpr integer isThermal = NUM_DOF-1;
Expand All @@ -70,8 +71,7 @@ class AccumulationKernel : public singlePhaseBaseKernels::AccumulationKernel< SU
: Base( rankOffset, dofKey, subRegion, localMatrix, localRhs ),
m_energy( subRegion.template getField< fields::flow::energy >() ),
m_energy_n( subRegion.template getField< fields::flow::energy_n >() ),
m_dEnergy( subRegion.template getField< fields::flow::dEnergy >() ),
m_dMass( subRegion.template getField< fields::flow::dMass >() )
m_dEnergy( subRegion.template getField< fields::flow::dEnergy >() )
{}

/**
Expand Down Expand Up @@ -128,10 +128,7 @@ class AccumulationKernel : public singlePhaseBaseKernels::AccumulationKernel< SU
/// View on energy
arrayView1d< real64 const > const m_energy;
arrayView1d< real64 const > const m_energy_n;
arrayView2d< real64 const > const m_dEnergy;

/// View on mass derivative
arrayView2d< real64 const > const m_dMass;
arrayView2d< real64 const, constitutive::singlefluid::USD_FLUID > const m_dEnergy;

};

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13 changes: 1 addition & 12 deletions ...ponents/physicsSolvers/multiphysics/poromechanicsKernels/SinglePhasePoromechanicsEFEM.hpp
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Expand Up @@ -63,7 +63,6 @@ class SinglePhasePoromechanicsEFEM :
using Base::m_elemsToNodes;
using Base::m_constitutiveUpdate;
using Base::m_finiteElementSpace;
using Base::m_dt;


SinglePhasePoromechanicsEFEM( NodeManager const & nodeManager,
Expand Down Expand Up @@ -250,24 +249,18 @@ class SinglePhasePoromechanicsEFEM :

/// The rank global fluid mass
arrayView1d< real64 const > const m_fluidMass;
arrayView1d< real64 const > const m_dFluidMass_dPressure;
arrayView1d< real64 const > const m_fluidMass_n;
arrayView2d< real64 const, constitutive::singlefluid::USD_FLUID > const m_dFluidMass;

/// The rank global densities
arrayView2d< real64 const > const m_solidDensity;
arrayView2d< real64 const, constitutive::singlefluid::USD_FLUID > const m_fluidDensity;
arrayView2d< real64 const, constitutive::singlefluid::USD_FLUID > const m_fluidDensity_n;
arrayView3d< real64 const, constitutive::singlefluid::USD_FLUID_DER > const m_dFluidDensity;

/// The rank-global fluid pressure array.
arrayView1d< real64 const > const m_matrixPressure;

/// The rank-global fluid pressure array.
arrayView1d< real64 const > const m_fracturePressure;

/// The rank-global delta-fluid pressure array.
arrayView2d< real64 const > const m_porosity_n;

arrayView2d< real64 const > const m_tractionVec;

arrayView3d< real64 const > const m_dTraction_dJump;
Expand All @@ -286,10 +279,6 @@ class SinglePhasePoromechanicsEFEM :

arrayView1d< real64 const > const m_elementVolumeCell;

arrayView1d< real64 const > const m_elementVolumeFrac;

arrayView1d< real64 const > const m_deltaVolume;

SortedArrayView< localIndex const > const m_fracturedElems;

ArrayOfArraysView< localIndex const > const m_cellsToEmbeddedSurfaces;
Expand Down
8 changes: 1 addition & 7 deletions ...ts/physicsSolvers/multiphysics/poromechanicsKernels/SinglePhasePoromechanicsEFEM_impl.hpp
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Original file line number Diff line number Diff line change
Expand Up @@ -77,14 +77,10 @@ SinglePhasePoromechanicsEFEM( NodeManager const & nodeManager,
m_wDofNumber( jumpDofNumber ),
m_fluidMass( embeddedSurfSubRegion.template getField< fields::flow::mass >() ),
m_fluidMass_n( embeddedSurfSubRegion.template getField< fields::flow::mass_n >() ),
m_dFluidMass( embeddedSurfSubRegion.template getField< fields::flow::dMass_dPressure >() ),
m_dFluidMass( embeddedSurfSubRegion.template getField< fields::flow::dMass >() ),
m_fluidDensity( embeddedSurfSubRegion.template getConstitutiveModel< constitutive::SingleFluidBase >( elementSubRegion.template getReference< string >( fluidModelKey ) ).density() ),
m_fluidDensity_n( embeddedSurfSubRegion.template getConstitutiveModel< constitutive::SingleFluidBase >( elementSubRegion.template getReference< string >( fluidModelKey ) ).density_n() ),
m_dFluidDensity( embeddedSurfSubRegion.template getConstitutiveModel< constitutive::SingleFluidBase >( elementSubRegion.template getReference< string >(
fluidModelKey ) ).dDensity() ),
m_matrixPressure( elementSubRegion.template getField< fields::flow::pressure >() ),
m_fracturePressure( embeddedSurfSubRegion.template getField< fields::flow::pressure >() ),
m_porosity_n( inputConstitutiveType.getPorosity_n() ),
m_tractionVec( embeddedSurfSubRegion.getField< fields::contact::traction >() ),
m_dTraction_dJump( embeddedSurfSubRegion.getField< fields::contact::dTraction_dJump >() ),
m_dTraction_dPressure( embeddedSurfSubRegion.getField< fields::contact::dTraction_dPressure >() ),
Expand All @@ -94,8 +90,6 @@ SinglePhasePoromechanicsEFEM( NodeManager const & nodeManager,
m_surfaceCenter( embeddedSurfSubRegion.getElementCenter() ),
m_surfaceArea( embeddedSurfSubRegion.getElementArea() ),
m_elementVolumeCell( elementSubRegion.getElementVolume() ),
m_elementVolumeFrac( embeddedSurfSubRegion.getElementVolume() ),
m_deltaVolume( embeddedSurfSubRegion.template getField< fields::flow::deltaVolume >() ),
m_fracturedElems( elementSubRegion.fracturedElementsList() ),
m_cellsToEmbeddedSurfaces( elementSubRegion.embeddedSurfacesList().toViewConst() ),
m_gravityVector{ inputGravityVector[0], inputGravityVector[1], inputGravityVector[2] },
Expand Down
25 changes: 6 additions & 19 deletions .../physicsSolvers/multiphysics/poromechanicsKernels/ThermalSinglePhasePoromechanicsEFEM.hpp
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Original file line number Diff line number Diff line change
Expand Up @@ -58,13 +58,10 @@ class ThermalSinglePhasePoromechanicsEFEM :
using Base::m_fracturePresDofNumber;
using Base::m_matrixPresDofNumber;
using Base::m_wDofNumber;
using Base::m_dFluidDensity;
using Base::m_porosity_n;
using Base::m_dFluidMass;
using Base::m_fluidDensity;
using Base::m_surfaceArea;
using Base::m_elementVolumeFrac;
using Base::m_deltaVolume;
using Base::m_cellsToEmbeddedSurfaces;
using Base::m_dt;

ThermalSinglePhasePoromechanicsEFEM( NodeManager const & nodeManager,
EdgeManager const & edgeManager,
Expand Down Expand Up @@ -158,25 +155,15 @@ class ThermalSinglePhasePoromechanicsEFEM :

private:

/// Views on fluid density derivatives
arrayView2d< real64 const > const m_dFluidMass;

/// Views on fluid density derivatives
arrayView3d< real64 const, constitutive::singlefluid::USD_FLUID_DER > const m_dFluidDensity;

/// Views on fluid internal energy
arrayView2d< real64 const, constitutive::singlefluid::USD_FLUID > const m_fluidInternalEnergy;

/// Views on energy
arrayView1d< real64 const > const m_energy;
arrayView1d< real64 const > const m_energy_n;
arrayView2d< real64 const > const m_dEnergy;
arrayView2d< real64 const, constitutive::singlefluid::USD_FLUID > const m_dEnergy;

/// Views on temperature
arrayView1d< real64 const > const m_temperature;
arrayView1d< real64 const > const m_temperature_n;
/// Views on fluid internal energy
arrayView2d< real64 const, constitutive::singlefluid::USD_FLUID > const m_fluidInternalEnergy;

/// The rank-global fluid pressure array.
/// The rank-global fluid temperature array.
arrayView1d< real64 const > const m_matrixTemperature;
};

Expand Down
17 changes: 7 additions & 10 deletions ...icsSolvers/multiphysics/poromechanicsKernels/ThermalSinglePhasePoromechanicsEFEM_impl.hpp
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Original file line number Diff line number Diff line change
Expand Up @@ -66,13 +66,10 @@ ThermalSinglePhasePoromechanicsEFEM( NodeManager const & nodeManager,
inputDt,
inputGravityVector,
fluidModelKey ),
m_dFluidMass_dTemperature( embeddedSurfSubRegion.template getField< fields::flow::dMass_dTemperature >() ),
m_fluidInternalEnergy( embeddedSurfSubRegion.template getConstitutiveModel< constitutive::SingleFluidBase >( elementSubRegion.template getReference< string >( fluidModelKey ) ).internalEnergy() ),
m_energy( elementSubRegion.template getField< fields::flow::energy >() ),
m_energy_n( elementSubRegion.template getField< fields::flow::energy_n >() ),
m_dEnergy( elementSubRegion.template getField< fields::flow::dEnergy >() ),
m_temperature( embeddedSurfSubRegion.template getField< fields::flow::temperature >() ),
m_temperature_n( embeddedSurfSubRegion.template getField< fields::flow::temperature_n >() ),
m_fluidInternalEnergy( embeddedSurfSubRegion.template getConstitutiveModel< constitutive::SingleFluidBase >( elementSubRegion.template getReference< string >( fluidModelKey ) ).internalEnergy() ),
m_matrixTemperature( elementSubRegion.template getField< fields::flow::temperature >() )
{}

Expand Down Expand Up @@ -171,16 +168,16 @@ complete( localIndex const k,

localIndex const embSurfIndex = m_cellsToEmbeddedSurfaces[k][0];

stack.dFluidMassIncrement_dTemperature = m_dFluidMass[ embSurfIndex ][ DerivOffset::dT ];
stack.dFluidMassIncrement_dTemperature = m_dFluidMass[embSurfIndex][DerivOffset::dT];

// Energy balance accumulation
stack.energyIncrement = m_energy[embSurfIndex] - m_energy_n[embSurfIndex];
stack.dEnergyIncrement_dJump = m_fluidDensity( embSurfIndex, 0 ) * m_fluidInternalEnergy( embSurfIndex, 0 ) * m_surfaceArea[ embSurfIndex ];
stack.dEnergyIncrement_dPressure = m_dEnergy[ embSurfIndex ][ DerivOffset::dP ];
stack.dEnergyIncrement_dTemperature = m_dEnergy[ embSurfIndex ][ DerivOffset::dT ];
stack.dEnergyIncrement_dJump = m_fluidDensity[embSurfIndex][0] * m_fluidInternalEnergy[embSurfIndex][0] * m_surfaceArea[embSurfIndex];
stack.dEnergyIncrement_dPressure = m_dEnergy[embSurfIndex][DerivOffset::dP];
stack.dEnergyIncrement_dTemperature = m_dEnergy[embSurfIndex][DerivOffset::dT];

globalIndex const fracturePressureDof = m_fracturePresDofNumber[ embSurfIndex ];
globalIndex const fractureTemperatureDof = m_fracturePresDofNumber[ embSurfIndex ] + 1;
globalIndex const fracturePressureDof = m_fracturePresDofNumber[embSurfIndex];
globalIndex const fractureTemperatureDof = m_fracturePresDofNumber[embSurfIndex] + 1;
localIndex const massBalanceEquationIndex = fracturePressureDof - m_dofRankOffset;
localIndex const energyBalanceEquationIndex = massBalanceEquationIndex + 1;

Expand Down

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