feat: well time step selector based on rates/bhp tables and clarify well rates logic #9478
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name: GEOS CI | |
on: | |
push: | |
branches: | |
- develop | |
pull_request: | |
types: [opened, synchronize, reopened] | |
workflow_dispatch: | |
# Cancels in-progress workflows for a PR when updated | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
# Please define `build.args.GEOS_TPL_TAG` in `.devcontainer/devcontainer.json` | |
jobs: | |
# Checks if PR title follows conventional semantics | |
semantic_pull_request: | |
permissions: | |
pull-requests: write # for amannn/action-semantic-pull-request to analyze PRs and | |
statuses: write # for amannn/action-semantic-pull-request to mark status of analyzed PR | |
contents: read | |
runs-on: ubuntu-latest | |
steps: | |
- name: Check if the PR name has conventional semantics | |
if: github.event_name == 'pull_request' | |
uses: amannn/[email protected] | |
id: lint_pr_title | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
with: | |
wip: true | |
# Configure that a scope doesn't need to be provided. | |
requireScope: false | |
- name: Skip the check on develop branch | |
if: github.ref_name == 'develop' | |
run: | | |
echo "This in't a Pull-Request, skipping" | |
# Jobs will be cancelled if PR is a draft. | |
# PR status must be "Open" to run CI. | |
is_not_draft_pull_request: | |
# if: ${{ always() }} | |
needs: [semantic_pull_request] | |
# Everywhere in this workflow, we use the most recent ubuntu distribution available in Github Actions | |
# to ensure maximum support of google cloud's sdk. | |
runs-on: ubuntu-22.04 | |
outputs: | |
DOCKER_IMAGE_TAG: ${{ steps.extract_docker_image_tag.outputs.DOCKER_IMAGE_TAG }} | |
steps: | |
- name: Check that the PR is not a draft (cancel rest of jobs otherwise) | |
id: extract_pr_info | |
run: | | |
if [[ ${{github.event_name}} == 'pull_request' ]]; then | |
# We do not rely on the `github.event.pull_request.labels` information since it's cached at the job. | |
# Changing labels or assignee in the PR would not allow to simply re-run the job with a different outcome. | |
pr_json=$(curl -H "Accept: application/vnd.github+json" https://api.github.com/repos/${{ github.repository }}/pulls/${{ github.event.number }}) | |
# We stop the workflow if the pr is draft | |
draft_status=$(echo ${pr_json} | jq '.draft') | |
echo "Draft status of PR is ${draft_status}." | |
if [[ $draft_status == true ]]; then exit 1 ; fi | |
fi | |
# The TPL tag is contained in the codespaces configuration to avoid duplications. | |
- name: Checkout .devcontainer/devcontainer.json | |
uses: actions/[email protected] | |
with: | |
sparse-checkout: | | |
.devcontainer/devcontainer.json | |
sparse-checkout-cone-mode: false | |
submodules: false | |
lfs: false | |
fetch-depth: 1 | |
- name: Extract docker image tag | |
id: extract_docker_image_tag | |
run: | | |
echo "DOCKER_IMAGE_TAG=$(jq '.build.args.GEOS_TPL_TAG' -r .devcontainer/devcontainer.json)" >> "$GITHUB_OUTPUT" | |
# PR must be assigned to be merged. | |
# This job will fail if this is not the case. | |
if_not_unassigned_pull_request: | |
needs: [is_not_draft_pull_request] | |
runs-on: ubuntu-22.04 | |
steps: | |
- name: If this is a PR, Check that it is assigned | |
run: | | |
if [[ ${{github.event_name}} != 'pull_request' ]]; then exit 0 ; fi | |
pr_json=$(curl -H "Accept: application/vnd.github+json" https://api.github.com/repos/${{ github.repository }}/pulls/${{ github.event.number }}) | |
NUM_ASSIGNEES=$(echo ${pr_json} | jq '.assignees | length') | |
echo "There are ${NUM_ASSIGNEES} assignees on this PR." | |
if [[ $NUM_ASSIGNEES == 0 ]]; then exit 1 ; fi | |
# Validates that the PR is still pointing to the HEAD of the main branch of the submodules repositories. | |
# (There are exceptions, read the script about those). | |
are_submodules_in_sync: | |
needs: [is_not_draft_pull_request] | |
runs-on: ubuntu-22.04 | |
steps: | |
# The integrated test submodule repository contains large data (using git lfs). | |
# To save time (and money) we do not let Github Actions automatically clone all our (lfs) subrepositories and do it by hand. | |
- name: Checkout Repository | |
uses: actions/[email protected] | |
with: | |
# Let script update submodules; Github Actions submodule history causes error | |
submodules: false | |
lfs: false | |
fetch-depth: 1 | |
- name: Check that submodules are up to date | |
run: "scripts/test_submodule_updated.sh" | |
check_code_style_and_documentation: | |
name: ${{ matrix.name }} | |
needs: [is_not_draft_pull_request] | |
strategy: | |
fail-fast : false | |
matrix: | |
include: | |
# Validates the code-style using uncrustify | |
- name: Check code style | |
BUILD_AND_TEST_ARGS: --test-code-style | |
# Validates that the documentation generated using doxygen has no hole. | |
- name: Check documentation | |
BUILD_AND_TEST_ARGS: --test-documentation | |
uses: ./.github/workflows/build_and_test.yml | |
with: | |
BUILD_AND_TEST_CLI_ARGS: ${{ matrix.BUILD_AND_TEST_ARGS }} | |
CMAKE_BUILD_TYPE: Release | |
DOCKER_IMAGE_TAG: ${{ needs.is_not_draft_pull_request.outputs.DOCKER_IMAGE_TAG }} | |
DOCKER_REPOSITORY: geosx/ubuntu20.04-gcc9 | |
RUNS_ON: ubuntu-22.04 | |
USE_SCCACHE: false | |
# Matrix containing all the CPU build. | |
# Those are quite fast and can efficiently benefit from the `sccache' tool to make them even faster. | |
cpu_builds: | |
name: ${{ matrix.name }} | |
needs: [is_not_draft_pull_request] | |
strategy: | |
# In-progress jobs will not be cancelled if there is a failure | |
fail-fast : false | |
matrix: | |
include: | |
- name: Ubuntu (20.04, gcc 9.4.0, open-mpi 4.0.3) | |
CMAKE_BUILD_TYPE: Release | |
DOCKER_REPOSITORY: geosx/ubuntu20.04-gcc9 | |
BUILD_SHARED_LIBS: ON | |
- name: Ubuntu debug (20.04, gcc 10.5.0, open-mpi 4.0.3) - github codespaces | |
CMAKE_BUILD_TYPE: Debug | |
DOCKER_REPOSITORY: geosx/ubuntu20.04-gcc10 | |
BUILD_SHARED_LIBS: ON | |
- name: Ubuntu (20.04, gcc 10.5.0, open-mpi 4.0.3) - github codespaces | |
CMAKE_BUILD_TYPE: Release | |
DOCKER_REPOSITORY: geosx/ubuntu20.04-gcc10 | |
BUILD_SHARED_LIBS: ON | |
- name: Ubuntu (22.04, gcc 11.4.0, open-mpi 4.1.2) | |
CMAKE_BUILD_TYPE: Release | |
DOCKER_REPOSITORY: geosx/ubuntu22.04-gcc11 | |
ENABLE_HYPRE: ON | |
ENABLE_TRILINOS: OFF | |
GCP_BUCKET: geosx/ubuntu22.04-gcc11 | |
BUILD_SHARED_LIBS: ON | |
- name: Ubuntu (22.04, gcc 12.3.0, open-mpi 4.1.2) | |
CMAKE_BUILD_TYPE: Release | |
DOCKER_REPOSITORY: geosx/ubuntu22.04-gcc12 | |
ENABLE_HYPRE: ON | |
ENABLE_TRILINOS: OFF | |
BUILD_SHARED_LIBS: ON | |
- name: Ubuntu (22.04, clang 15.0.7, open-mpi 4.1.2) | |
CMAKE_BUILD_TYPE: Release | |
DOCKER_REPOSITORY: geosx/ubuntu22.04-clang15 | |
ENABLE_HYPRE: ON | |
ENABLE_TRILINOS: OFF | |
BUILD_SHARED_LIBS: ON | |
uses: ./.github/workflows/build_and_test.yml | |
with: | |
BUILD_SHARED_LIBS: ${{ matrix.BUILD_SHARED_LIBS }} | |
CMAKE_BUILD_TYPE: ${{ matrix.CMAKE_BUILD_TYPE }} | |
DOCKER_IMAGE_TAG: ${{ needs.is_not_draft_pull_request.outputs.DOCKER_IMAGE_TAG }} | |
DOCKER_REPOSITORY: ${{ matrix.DOCKER_REPOSITORY }} | |
ENABLE_HYPRE: ${{ matrix.ENABLE_HYPRE }} | |
ENABLE_TRILINOS: ${{ matrix.ENABLE_TRILINOS }} | |
GCP_BUCKET: ${{ matrix.GCP_BUCKET }} | |
RUNS_ON: ubuntu-22.04 | |
secrets: inherit | |
# If the 'ci: run integrated tests' PR label is found, the integrated tests will be run immediately after the cpu jobs. | |
# Note: The integrated tests are optional and are (for the moment) run for convenience only. | |
run_integrated_tests: | |
needs: | |
- is_not_draft_pull_request | |
- cpu_builds | |
uses: ./.github/workflows/build_and_test.yml | |
secrets: inherit | |
with: | |
BUILD_AND_TEST_CLI_ARGS: --build-exe-only | |
BUILD_TYPE: integrated_tests | |
CMAKE_BUILD_TYPE: Release | |
DOCKER_IMAGE_TAG: ${{ needs.is_not_draft_pull_request.outputs.DOCKER_IMAGE_TAG }} | |
DOCKER_REPOSITORY: geosx/ubuntu22.04-gcc11 | |
ENABLE_HYPRE: ON | |
ENABLE_TRILINOS: OFF | |
GCP_BUCKET: geosx/integratedTests | |
RUNS_ON: streak2-32core | |
NPROC: 32 | |
DOCKER_RUN_ARGS: "--cpus=32 --memory=384g -v /etc/pki/ca-trust/source/anchors/:/usr/local/share/ca-certificates/llnl:ro" | |
DOCKER_CERTS_DIR: "/usr/local/share/ca-certificates" | |
DOCKER_CERTS_UPDATE_COMMAND: "update-ca-certificates" | |
REQUIRED_LABEL: "ci: run integrated tests" | |
LOCAL_BASELINE_DIR: /data/GEOS/baselines | |
baseline_log: | |
needs: [is_not_draft_pull_request] | |
runs-on: ubuntu-22.04 | |
steps: | |
- name: Checkout Repository | |
uses: actions/[email protected] | |
with: | |
submodules: false | |
lfs: false | |
fetch-depth: 0 | |
sparse-checkout: | | |
scripts | |
- name: Check that the baseline logs are modified if rebaselines are detected | |
run: "scripts/check_baseline_log.sh" | |
code_coverage: | |
needs: | |
- is_not_draft_pull_request | |
uses: ./.github/workflows/build_and_test.yml | |
secrets: inherit | |
with: | |
BUILD_AND_TEST_CLI_ARGS: "--no-run-unit-tests" | |
CMAKE_BUILD_TYPE: Debug | |
CODE_COVERAGE: true | |
DOCKER_IMAGE_TAG: ${{ needs.is_not_draft_pull_request.outputs.DOCKER_IMAGE_TAG }} | |
DOCKER_REPOSITORY: geosx/ubuntu22.04-gcc11 | |
ENABLE_HYPRE: ON | |
ENABLE_TRILINOS: OFF | |
GCP_BUCKET: geosx/ubuntu22.04-gcc11 | |
RUNS_ON: Runner_4core_16GB | |
REQUIRED_LABEL: "ci: run code coverage" | |
# mac_builds: | |
# needs: | |
# - is_not_draft_pull_request | |
# runs-on: macos-14-xlarge | |
# steps: | |
# - run: sysctl -n hw.physicalcpu | |
# - run: sysctl -h hw.memsize | |
# - run: sysctl -n machdep.cpu.brand_string | |
# If the 'ci: run CUDA builds' PR label is found, the cuda jobs run immediately along side linux jobs. | |
# Note: CUDA jobs should only be run if PR is ready to merge. | |
cuda_builds: | |
name: ${{ matrix.name }} | |
needs: | |
- is_not_draft_pull_request | |
strategy: | |
# In-progress jobs will not be cancelled if there is a failure | |
fail-fast : false | |
matrix: | |
include: | |
- name: Ubuntu CUDA debug (20.04, clang 10.0.0 + gcc 9.4.0, open-mpi 4.0.3, cuda-11.8.89) | |
BUILD_AND_TEST_CLI_ARGS: "--build-exe-only --no-install-schema" | |
CMAKE_BUILD_TYPE: Debug | |
BUILD_GENERATOR: "--ninja" | |
DOCKER_REPOSITORY: geosx/ubuntu20.04-clang10.0.0-cuda11.8.89 | |
ENABLE_HYPRE_DEVICE: CUDA | |
ENABLE_HYPRE: ON | |
ENABLE_TRILINOS: OFF | |
RUNS_ON: streak2 | |
NPROC: 8 | |
DOCKER_RUN_ARGS: "--cpus=8 --memory=128g --runtime=nvidia -v /etc/pki/ca-trust/source/anchors/:/usr/local/share/ca-certificates/llnl:ro" | |
DOCKER_CERTS_DIR: "/usr/local/share/ca-certificates" | |
DOCKER_CERTS_UPDATE_COMMAND: "update-ca-certificates" | |
- name: Ubuntu CUDA (20.04, clang 10.0.0 + gcc 9.4.0, open-mpi 4.0.3, cuda-11.8.89) | |
BUILD_AND_TEST_CLI_ARGS: "--no-install-schema" | |
CMAKE_BUILD_TYPE: Release | |
BUILD_GENERATOR: "--ninja" | |
DOCKER_REPOSITORY: geosx/ubuntu20.04-clang10.0.0-cuda11.8.89 | |
ENABLE_HYPRE_DEVICE: CUDA | |
ENABLE_HYPRE: ON | |
ENABLE_TRILINOS: OFF | |
RUNS_ON: streak | |
NPROC: 8 | |
DOCKER_RUN_ARGS: "--cpus=8 --memory=256g --runtime=nvidia --gpus all -v /etc/pki/ca-trust/source/anchors/:/usr/local/share/ca-certificates/llnl:ro" | |
DOCKER_CERTS_DIR: "/usr/local/share/ca-certificates" | |
DOCKER_CERTS_UPDATE_COMMAND: "update-ca-certificates" | |
- name: Rockylinux CUDA (8, clang 17.0.6, cuda 12.5.1) | |
BUILD_AND_TEST_CLI_ARGS: "--no-install-schema" | |
CMAKE_BUILD_TYPE: Release | |
BUILD_GENERATOR: "--ninja" | |
ENABLE_HYPRE_DEVICE: CUDA | |
ENABLE_HYPRE: ON | |
ENABLE_TRILINOS: OFF | |
DOCKER_REPOSITORY: geosx/rockylinux8-clang17-cuda12.5 | |
RUNS_ON: streak | |
NPROC: 8 | |
DOCKER_RUN_ARGS: "--cpus=8 --memory=256g --runtime=nvidia --gpus all -v /etc/pki/ca-trust/source/anchors/:/usr/local/share/ca-certificates/llnl:ro" | |
DOCKER_CERTS_DIR: "/usr/local/share/ca-certificates" | |
DOCKER_CERTS_UPDATE_COMMAND: "update-ca-trust" | |
- name: Rockylinux CUDA (8, gcc 8.5, cuda 12.5.1) | |
BUILD_AND_TEST_CLI_ARGS: "--no-run-unit-tests --no-install-schema" | |
CMAKE_BUILD_TYPE: Release | |
BUILD_GENERATOR: "--ninja" | |
ENABLE_HYPRE_DEVICE: CUDA | |
ENABLE_HYPRE: ON | |
ENABLE_TRILINOS: OFF | |
DOCKER_REPOSITORY: geosx/rockylinux8-gcc8-cuda12.5 | |
RUNS_ON: streak2 | |
NPROC: 8 | |
DOCKER_RUN_ARGS: "--cpus=8 --memory=128g --runtime=nvidia -v /etc/pki/ca-trust/source/anchors/:/etc/pki/ca-trust/source/anchors/llnl:ro" | |
DOCKER_CERTS_DIR: "/etc/pki/ca-trust/source/anchors" | |
DOCKER_CERTS_UPDATE_COMMAND: "update-ca-trust" | |
- name: Pangea 3 CUDA (AlmaLinux 8.8, gcc 9.4.0, open-mpi 4.1.2, cuda 11.5.0, openblas 0.3.10) | |
BUILD_AND_TEST_CLI_ARGS: "--build-exe-only --no-install-schema" | |
CMAKE_BUILD_TYPE: Release | |
BUILD_GENERATOR: "--makefile" | |
DOCKER_REPOSITORY: geosx/pangea3-almalinux8-gcc9.4-openmpi4.1.2-cuda11.5.0-openblas0.3.18 | |
HOST_CONFIG: host-configs/TOTAL/pangea3-gcc8.4.1-openmpi-4.1.2-wave-solver.cmake | |
ENABLE_HYPRE_DEVICE: CUDA | |
ENABLE_HYPRE: ON | |
ENABLE_TRILINOS: OFF | |
HOST_ARCH: ppc64le | |
RUNS_ON: streak2 | |
NPROC: 8 | |
DOCKER_RUN_ARGS: "--cpus=8 --memory=128g -v /etc/pki/ca-trust/source/anchors/:/etc/pki/ca-trust/source/anchors/llnl:ro" | |
DOCKER_CERTS_DIR: "/etc/pki/ca-trust/source/anchors" | |
DOCKER_CERTS_UPDATE_COMMAND: "update-ca-trust" | |
# Below this line, jobs that deploy to Google Cloud. | |
uses: ./.github/workflows/build_and_test.yml | |
with: | |
BUILD_AND_TEST_CLI_ARGS: ${{ matrix.BUILD_AND_TEST_CLI_ARGS }} | |
CMAKE_BUILD_TYPE: ${{ matrix.CMAKE_BUILD_TYPE }} | |
BUILD_GENERATOR: ${{ matrix.BUILD_GENERATOR }} | |
DOCKER_CERTS_DIR: ${{ matrix.DOCKER_CERTS_DIR }} | |
DOCKER_CERTS_UPDATE_COMMAND: ${{ matrix.DOCKER_CERTS_UPDATE_COMMAND }} | |
DOCKER_IMAGE_TAG: ${{ needs.is_not_draft_pull_request.outputs.DOCKER_IMAGE_TAG }} | |
DOCKER_REPOSITORY: ${{ matrix.DOCKER_REPOSITORY }} | |
DOCKER_RUN_ARGS: ${{ matrix.DOCKER_RUN_ARGS }} | |
ENABLE_HYPRE_DEVICE: ${{ matrix.ENABLE_HYPRE_DEVICE }} | |
ENABLE_HYPRE: ${{ matrix.ENABLE_HYPRE }} | |
ENABLE_TRILINOS: ${{ matrix.ENABLE_TRILINOS }} | |
GCP_BUCKET: ${{ matrix.GCP_BUCKET }} | |
HOST_ARCH: ${{ matrix.HOST_ARCH }} | |
HOST_CONFIG: ${{ matrix.HOST_CONFIG }} | |
NPROC: ${{ matrix.NPROC }} | |
RUNS_ON: ${{ matrix.RUNS_ON }} | |
REQUIRED_LABEL: "ci: run CUDA builds" | |
secrets: inherit | |
# Convenience job - passes when all other jobs have passed (must pass the CUDA jobs). | |
check_that_all_jobs_succeeded: | |
runs-on: ubuntu-22.04 | |
needs: | |
- if_not_unassigned_pull_request | |
- are_submodules_in_sync | |
- check_code_style_and_documentation | |
- cpu_builds | |
- cuda_builds | |
- run_integrated_tests | |
if: ${{ always() }} | |
steps: | |
- run: | | |
echo "if_not_unassigned_pull_request: ${{needs.if_not_unassigned_pull_request.result}}" | |
echo "are_submodules_in_sync: ${{needs.are_submodules_in_sync.result}}" | |
echo "check_code_style_and_documentation: ${{needs.check_code_style_and_documentation.result}}" | |
echo "cpu_builds: ${{needs.cpu_builds.result}}" | |
echo "cuda_builds: ${{needs.cuda_builds.result}}" | |
echo "run_integrated_tests: ${{needs.run_integrated_tests.result}} " | |
${{ | |
needs.if_not_unassigned_pull_request.result == 'success' && | |
needs.are_submodules_in_sync.result == 'success' && | |
needs.check_code_style_and_documentation.result == 'success' && | |
needs.cpu_builds.result == 'success' && | |
needs.cuda_builds.result == 'success' && | |
needs.run_integrated_tests.result == 'success' | |
}} |