DaVinci: Deconvolving latent Variables for integrated niche cluster identification

To install the R package from this github repository

remotes::install_github("FunctionLab/DaVinci")

If you have problems installing

You can download the the repo to working_directory and use the following code block to inlcude all DaVinci functions in your working environment.

library(Rcpp)
library(mclust)

script.path <- "working_directory/R/"
script.list <- list.files(script.path)
script.list <- setdiff(script.list, c("DAVINCHI.R", "import.R", "RcppExports.R"))
script.list <- paste0(script.path, script.list)
sapply(script.list, source)

sourceCpp("working_directory/src/util.cpp")

Tutorials

We provide step-by-step tutorials for applying DaVinci to a variety of spatial omics datasets. Detailed documentation is available here.