initial attempt to recompress dicom #33
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Continuous integration testing for ChRIS Plugin. | |
| # https://github.com/FNNDSC/python-chrisapp-template/wiki/Continuous-Integration | |
| # | |
| # - on push and PR: run pytest | |
| # - on push to main: build and push container images as ":latest" | |
| # - on push to semver tag: build and push container image with tag and | |
| # upload plugin description to https://chrisstore.co | |
| name: build | |
| on: | |
| push: | |
| branches: [ main ] | |
| tags: | |
| - "v?[0-9]+.[0-9]+.[0-9]+*" | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| test: | |
| name: Unit tests | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: docker/setup-buildx-action@v2 | |
| - name: Cache Docker layers | |
| uses: actions/cache@v3 | |
| with: | |
| path: /tmp/.buildx-cache | |
| key: ${{ runner.os }}-buildx-${{ github.sha }} | |
| restore-keys: | | |
| ${{ runner.os }}-buildx- | |
| - name: Build | |
| uses: docker/build-push-action@v3 | |
| with: | |
| build-args: extras_require=dev | |
| context: . | |
| load: true | |
| push: false | |
| tags: "localhost/local/app:dev" | |
| cache-from: type=local,src=/tmp/.buildx-cache | |
| cache-to: type=local,dest=/tmp/.buildx-cache | |
| - name: Run pytest | |
| run: | | |
| docker run -v "$GITHUB_WORKSPACE:/app:ro" -w /app localhost/local/app:dev \ | |
| pytest -o cache_dir=/tmp/pytest | |
| build: | |
| name: Build | |
| if: github.event_name == 'push' || github.event_name == 'release' | |
| # needs: [ test ] # uncomment to require passing tests | |
| runs-on: ubuntu-22.04 | |
| # A local registry helps us reuse the built image between steps | |
| services: | |
| registry: | |
| image: registry:2 | |
| ports: | |
| - 5000:5000 | |
| steps: | |
| - name: Get git tag | |
| id: git_info | |
| if: startsWith(github.ref, 'refs/tags/') | |
| run: echo "tag=${GITHUB_REF##*/}" >> $GITHUB_OUTPUT | |
| - name: Get project info | |
| id: determine | |
| env: | |
| git_tag: ${{ steps.git_info.outputs.tag }} | |
| run: | | |
| repo="${GITHUB_REPOSITORY,,}" # to lower case | |
| # if build triggered by tag, use tag name | |
| tag="${git_tag:-latest}" | |
| # if tag is a version number prefixed by 'v', remove the 'v' | |
| if [[ "$tag" =~ ^v[0-9].* ]]; then | |
| tag="${tag:1}" | |
| fi | |
| dock_image=$repo:$tag | |
| echo $dock_image | |
| echo "dock_image=$dock_image" >> $GITHUB_OUTPUT | |
| echo "repo=$repo" >> $GITHUB_OUTPUT | |
| - uses: actions/checkout@v3 | |
| # QEMU is used for non-x86_64 builds | |
| - uses: docker/setup-qemu-action@v2 | |
| # buildx adds additional features to docker build | |
| - uses: docker/setup-buildx-action@v2 | |
| with: | |
| driver-opts: network=host | |
| # cache slightly improves rebuild time | |
| - name: Cache Docker layers | |
| uses: actions/cache@v3 | |
| with: | |
| path: /tmp/.buildx-cache | |
| key: ${{ runner.os }}-buildx-${{ github.sha }} | |
| restore-keys: | | |
| ${{ runner.os }}-buildx- | |
| - name: Login to DockerHub | |
| id: dockerhub_login | |
| uses: docker/login-action@v2 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| - name: Login to GitHub Container Registry | |
| uses: docker/login-action@v2 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.repository_owner }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Build and push | |
| uses: docker/build-push-action@v3 | |
| id: docker_build | |
| with: | |
| context: . | |
| file: ./Dockerfile | |
| tags: | | |
| localhost:5000/${{ steps.determine.outputs.dock_image }} | |
| docker.io/${{ steps.determine.outputs.dock_image }} | |
| ghcr.io/${{ steps.determine.outputs.dock_image }} | |
| # if non-x86_84 architectures are supported, add them here | |
| platforms: linux/amd64 #,linux/arm64,linux/ppc64le | |
| push: true | |
| cache-from: type=local,src=/tmp/.buildx-cache | |
| cache-to: type=local,dest=/tmp/.buildx-cache | |
| - name: Get plugin meta | |
| id: pluginmeta | |
| run: | | |
| repo=${{ steps.determine.outputs.repo }} | |
| dock_image=${{ steps.determine.outputs.dock_image }} | |
| docker run --rm localhost:5000/$dock_image chris_plugin_info > /tmp/description.json | |
| jq < /tmp/description.json # pretty print in log | |
| echo "title=$(jq -r '.title' < /tmp/description.json)" >> $GITHUB_OUTPUT | |
| - name: Update DockerHub description | |
| uses: peter-evans/dockerhub-description@v3 | |
| continue-on-error: true # it is not crucial that this works | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| short-description: ${{ steps.pluginmeta.outputs.title }} | |
| readme-filepath: ./README.md | |
| repository: ${{ steps.determine.outputs.repo }} | |
| - name: Upload to ChRIS Store | |
| if: steps.git_info.outcome != 'skipped' | |
| uses: FNNDSC/chrisstore-action@master | |
| with: | |
| descriptor_file: /tmp/description.json | |
| auth: ${{ secrets.CHRIS_STORE_USER }} |