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20 Open 44 Closed
20 Open 44 Closed
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Issues list

invalid BGZF file: does not end in proper EOF marker
#74 opened Jul 27, 2024 by lucy-1n-the-ai
1
elprpe vcf-to-elsites dbSNP_156.vcf dbSNP_156.elsites [Killed]
#73 opened Oct 18, 2023 by QifengSun
NO_COOR error when trying to index the output bam file
#71 opened Apr 4, 2023 by ghost
build fails on ALMA linux 9
#70 opened Mar 21, 2023 by ntm
Option to output realigned BAM file during --haplotypecaller step
#69 opened Mar 16, 2023 by leonorpalmeira
elfasta-conversion error: bufio.Scanner: token too long
#68 opened Feb 28, 2023 by desmodus1984
6
Very low number of variants called by elprep in an heterozygous genome
#67 opened Feb 14, 2023 by chklopp
feature: index output
#66 opened Dec 22, 2022 by matthdsm
2
elprep merge: add input for intermediate files
#65 opened May 9, 2022 by matthdsm
header tag differs between runs
#64 opened Apr 13, 2022 by matthdsm
2
Add wiki page about "creating your own sfm script"
#63 opened Apr 13, 2022 by matthdsm
3
Proper running using sam input file?
#59 opened Jan 21, 2022 by desmodus1984
1
"exit status 2" error
#57 opened Dec 13, 2021 by yanlolo
2
Variant calling using sfm does not adhere to thread limit
#56 opened Oct 21, 2021 by matthdsm
13
[RFE] haplotypecaller: support for custom GVCF GQ slices
#52 opened Jun 30, 2021 by ntm
1
sfm --haplotypecaller introduces duplicate lines in BAM
#51 opened Jun 30, 2021 by ntm
2
Doing just variant calling /haplotypecaller? non-model organism no known-variant file for bqsr
#49 opened Jun 6, 2021 by desmodus1984
7
Converting a dbsnp vcf to elsites uses a lot of resources
#45 opened Mar 15, 2021 by pcostanza
3
Estimate RAM usage based on input filesize
#44 opened Mar 10, 2021 by matthdsm
14
UMI's and duplicate marking
#38 opened Sep 3, 2020 by matthdsm
1
ProTip! no:milestone will show everything without a milestone.