v2.0.2 on CRAN

DESCRIPTION

@@ -1,7 +1,12 @@
 Package: strataG
 Title: Summaries and Population Structure Analyses of Genetic Data
-Description: A toolkit for analyzing stratified population genetic data.
-Version: 2.0.1
+Description: A toolkit for analyzing stratified population genetic data. 
+  Functions are provided for summarizing and checking loci 
+  (haploid, diploid, and polyploid), single stranded DNA sequences,
+  calculating most population subdivision metrics, and running external programs 
+  such as structure and fastsimcoal. The package is further described in 
+  Archer et al (2016) <doi:10.1111/1755-0998.12559>.
+Version: 2.0.2
 License: GNU General Public License
 Authors@R: c(
   EA = person("Eric", "Archer", email = "[email protected]", role = c("aut", "cre")),

R/structure.R

@@ -65,7 +65,7 @@
 #' 
 #' @references Pritchard, J.K., M. Stephens, P. Donnelly. 2000. Inference of 
 #'   population structure using multilocus genotype data. Genetics 155:945-959.\cr 
-#'   \url{http://pritchardlab.stanford.edu/structure.html}
+#'   \url{http://web.stanford.edu/group/pritchardlab/structure.html}
 #' 
 #' @seealso \code{\link{structurePlot}}, \code{\link{evanno}}, 
 #'   \code{\link{clumpp}} 

README.md

@@ -62,7 +62,7 @@ Archer, F. 2016. *strataG*: An *R* package for manipulating, summarizing and ana
 * send a pull request: <https://github.com/ericarcher/strataG/>
 * e-mail: <[email protected]>
 
-## version 2.0.0 (current on GitHub)
+## version 2.0.2 (current on GitHub)
 
 * NOTE: In order to speed up indexing the data in large data sets, this version changes the underlying structure of the `gtypes` object by replacing the `@loci` data.frame slot with a `@data` data.table slot. The data.table has a `id` character column, a `strata` character column, and every column afterwards represents one locus. The `@strata` slot has been removed.
 * The `loci` accessor has been removed. 
@@ -72,6 +72,7 @@ Archer, F. 2016. *strataG*: An *R* package for manipulating, summarizing and ana
 * Fixed computational errors in population structure metrics due to incorrect sorting of stratification.
 * Added `maf` to return minimum allele frequency for each locus.
 * Added `ldNe` to calculate Ne.
+* Added `expandHaplotypes` to expand the haplotypes in a `gtypes` object to one sequence per individual.
 
 ## version 1.0.6