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[WIP] GOOS Essential Ocean Variable (EOV) semantics #1568

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[WIP] GOOS Essential Ocean Variable (EOV) semantics #1568

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3944981
biodiversity and planktonic / nektonic semantics
pbuttigieg Dec 10, 2024
ef1a28d
biodiversity qualities for BioEco EOV groups
pbuttigieg Dec 10, 2024
99100e2
Merge branch 'master' into 904-finalise-goos-eovs
pbuttigieg Dec 11, 2024
12ff47a
foundational semantics for signs, data, and variables
pbuttigieg Dec 11, 2024
3139ecf
adding BioEco EOV biomass semantics
pbuttigieg Dec 11, 2024
46c94ed
variable class for abundance and #1575
pbuttigieg Dec 11, 2024
d30e615
variable class for coverage EOVs
pbuttigieg Dec 11, 2024
64e4a93
biomass and biodiversity variable foundation
pbuttigieg Dec 16, 2024
e2f9c4c
Fix coral logic
pbuttigieg Dec 16, 2024
dc502a7
Add cover variables
pbuttigieg Dec 16, 2024
6b99fc3
adding abundance semantics, closes #1575
pbuttigieg Dec 16, 2024
b8556b8
added abundance semantics
pbuttigieg Dec 16, 2024
17dd6a3
added several biochemistry EOVs
pbuttigieg Dec 17, 2024
3b9f9b4
Merge branch 'master' into 904-finalise-goos-eovs
pbuttigieg Jan 13, 2025
2bfde94
Merge branch 'master' into 904-finalise-goos-eovs
pbuttigieg Feb 11, 2025
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Fix coral logic
  • Loading branch information
@pbuttigieg
pbuttigieg committed Dec 16, 2024
commit e2f9c4cf072fff3687adcbe2a6b03d682b11d66d
112 changes: 108 additions & 4 deletions src/envo/envo-edit.owl
View file
Original file line number Diff line number Diff line change
@@ -3374,6 +3374,19 @@ Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002051>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002052>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002053>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002054>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002055>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002056>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002057>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002058>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002059>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002060>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002061>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002062>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002063>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002064>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002065>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002066>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002067>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01003000>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01003001>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01003002>))
@@ -38358,7 +38371,7 @@ AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.ob
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01002030> <https://orcid.org/0000-0002-4366-3088>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01002030> "2024-12-16T13:20:02Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002030> "hard coral biodiversity variable"@en)
EquivalentClasses(<http://purl.obolibrary.org/obo/ENVO_01002030> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/ENVO_01001999> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/ENVO_01001998> <http://purl.obolibrary.org/obo/ENVO_01001986>)))
EquivalentClasses(<http://purl.obolibrary.org/obo/ENVO_01002030> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/ENVO_01002029> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/ENVO_01001998> <http://purl.obolibrary.org/obo/ENVO_01001986>)))
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002030> <http://purl.obolibrary.org/obo/ENVO_01002029>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002031> (fish biodiversity variable)
@@ -38458,16 +38471,16 @@ AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.oboli
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01002041> "2024-12-16T13:20:31Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002041> "coral biomass variable"@en)
EquivalentClasses(<http://purl.obolibrary.org/obo/ENVO_01002041> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/ENVO_01002000> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/ENVO_01001998> <http://purl.obolibrary.org/obo/ENVO_01002013>)))
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002041> <http://purl.obolibrary.org/obo/ENVO_01002042>)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002041> <http://purl.obolibrary.org/obo/ENVO_01002000>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002042> (hard coral biomass variable)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01002042> "A biomass variable which is about hard coral biomass.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01002042> <https://orcid.org/0000-0002-4366-3088>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01002042> "2024-12-16T13:20:31Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002042> "hard coral biomass variable"@en)
EquivalentClasses(<http://purl.obolibrary.org/obo/ENVO_01002042> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/ENVO_01002000> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/ENVO_01001998> <http://purl.obolibrary.org/obo/ENVO_01002014>)))
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002042> <http://purl.obolibrary.org/obo/ENVO_01002000>)
EquivalentClasses(<http://purl.obolibrary.org/obo/ENVO_01002042> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/ENVO_01002041> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/ENVO_01001998> <http://purl.obolibrary.org/obo/ENVO_01002014>)))
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002042> <http://purl.obolibrary.org/obo/ENVO_01002041>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002043> (fish biomass variable)

@@ -38578,6 +38591,97 @@ AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibra
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002054> "macroorganism"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002054> <http://purl.obolibrary.org/obo/OBI_0100026>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002055> (bird distribution variable)

AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01002055> <https://orcid.org/0000-0002-4366-3088>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01002055> "2024-12-16T14:09:23Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002055> "bird distribution variable"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002055> <http://purl.obolibrary.org/obo/ENVO_01002003>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002056> (coral distribution variable)

AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01002056> <https://orcid.org/0000-0002-4366-3088>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01002056> "2024-12-16T14:09:23Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002056> "coral distribution variable"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002056> <http://purl.obolibrary.org/obo/ENVO_01002003>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002057> (fish distribution variable)

AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01002057> <https://orcid.org/0000-0002-4366-3088>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01002057> "2024-12-16T14:09:23Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002057> "fish distribution variable"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002057> <http://purl.obolibrary.org/obo/ENVO_01002003>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002058> (hard coral distribution variable)

AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01002058> <https://orcid.org/0000-0002-4366-3088>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01002058> "2024-12-16T14:09:23Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002058> "hard coral distribution variable"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002058> <http://purl.obolibrary.org/obo/ENVO_01002003>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002059> (invertebrate distribution variable)

AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01002059> <https://orcid.org/0000-0002-4366-3088>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01002059> "2024-12-16T14:09:23Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002059> "invertebrate distribution variable"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002059> <http://purl.obolibrary.org/obo/ENVO_01002003>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002060> (macroalgal distribution variable)

AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01002060> <https://orcid.org/0000-0002-4366-3088>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01002060> "2024-12-16T14:09:23Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002060> "macroalgal distribution variable"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002060> <http://purl.obolibrary.org/obo/ENVO_01002003>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002061> (mammal distribution variable)

AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01002061> <https://orcid.org/0000-0002-4366-3088>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01002061> "2024-12-16T14:09:23Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002061> "mammal distribution variable"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002061> <http://purl.obolibrary.org/obo/ENVO_01002003>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002062> (mangrove distribution variable)

AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01002062> <https://orcid.org/0000-0002-4366-3088>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01002062> "2024-12-16T14:09:23Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002062> "mangrove distribution variable"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002062> <http://purl.obolibrary.org/obo/ENVO_01002003>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002063> (microbial distribution variable)

AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01002063> <https://orcid.org/0000-0002-4366-3088>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01002063> "2024-12-16T14:09:23Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002063> "microbial distribution variable"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002063> <http://purl.obolibrary.org/obo/ENVO_01002003>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002064> (phytoplankton distribution variable)

AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01002064> <https://orcid.org/0000-0002-4366-3088>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01002064> "2024-12-16T14:09:23Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002064> "phytoplankton distribution variable"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002064> <http://purl.obolibrary.org/obo/ENVO_01002003>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002065> (seagrass distribution variable)

AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01002065> <https://orcid.org/0000-0002-4366-3088>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01002065> "2024-12-16T14:09:23Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002065> "seagrass distribution variable"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002065> <http://purl.obolibrary.org/obo/ENVO_01002003>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002066> (turtle distribution variable)

AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01002066> <https://orcid.org/0000-0002-4366-3088>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01002066> "2024-12-16T14:09:23Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002066> "turtle distribution variable"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002066> <http://purl.obolibrary.org/obo/ENVO_01002003>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002067> (zooplankton distribution variable)

AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01002067> <https://orcid.org/0000-0002-4366-3088>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01002067> "2024-12-16T14:09:23Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002067> "zooplankton distribution variable"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002067> <http://purl.obolibrary.org/obo/ENVO_01002003>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01003000> (spacecraft)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <https://en.wikipedia.org/wiki/Spacecraft>) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01003000> "A vehicle designed to fly in outer space."@en)