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Remove uneccessary print statement
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alneberg committed Nov 15, 2018
1 parent c3490b2 commit 01c1330
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2 changes: 0 additions & 2 deletions workflows/seperate_assemblies/Snakefile
Original file line number Diff line number Diff line change
Expand Up @@ -139,8 +139,6 @@ for assembly_file in glob.glob("assembly/megahit/*/*/final.contigs.fa*"):

config["assemblies"] = config["concoct_rules"]['assemblies']

print(config['megahit_rules']['samples'].keys())

# add 10K cutup as references for bowtie2 to map against
config["bowtie2_rules"].setdefault("references", {}).update({a + "_10K": "binning/concoct/{a}/cutup/contigs_10K.fasta.gz".format(a=a) for a in config["concoct_rules"]["assemblies"]})
config["kallisto_rules"]["references"] = config["bowtie2_rules"]["references"]
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