EnsC-annotation-tools

This repository contains the OBDA and Programs directory from ensc-core found at https://github.com/Ensembl/ensc-core The binary used by the Ensembl Genome Annotation System are:

• translate
• fastasplit_random
• indicate
• RefineSolexaGenes

Dependencies

• EnsC-core
• MySQL (recommended)
• samtools (recommended)
• libconfig (recommended)

To compile the binaries

cd src
./autogen.sh
./runconfig
make

You can also specify parameters to runconfig like CPPFLAGS="-I/opt/local/include" LDFLAGS="-L/opt/local/lib"

Previous history

All unused code have been removed, so if you want to see the full history for some of the files you need to use the code from ensc-core