adding new_count and Makefile

beacon/request/handlers.py

@@ -160,6 +160,7 @@ async def wrapper(request: Request):
             datasets_docs={}
             datasets_count={}
             #LOG.debug(response_datasets)
+            new_count=0
             loop = asyncio.get_running_loop()
             for dataset in response_datasets:
                 with ThreadPoolExecutor() as pool:

deploy/Makefile

@@ -23,5 +23,21 @@ build:
 	docker exec rimongo mongoimport --jsonArray --uri "mongodb://root:[email protected]:27017/beacon?authSource=admin" --file /tmp/biosamples.json --collection biosamples
 	docker exec rimongo mongoimport --jsonArray --uri "mongodb://root:[email protected]:27017/beacon?authSource=admin" --file /tmp/runs.json --collection runs
 	docker exec rimongo mongoimport --jsonArray --uri "mongodb://root:[email protected]:27017/beacon?authSource=admin" --file /tmp/genomicVariations.json --collection genomicVariations
+	docker cp /data/vault/bio-scratch/arnau/beacon/beacon2-ri-tools-v2_test_anot/tcga-coad/analyses.json mongoega:tmp/analyses.json
+	docker cp /data/vault/bio-scratch/arnau/beacon/beacon2-ri-tools-v2_test_anot/tcga-coad/biosamples.json mongoega:tmp/biosamples.json
+	docker cp /data/vault/bio-scratch/arnau/beacon/beacon2-ri-tools-v2_test_anot/tcga-coad/cohorts.json mongoega:tmp/cohorts.json
+	docker cp /data/vault/bio-scratch/arnau/beacon/beacon2-ri-tools-v2_test_anot/tcga-coad/datasets.json mongoega:tmp/datasets.json
+	docker cp /data/vault/bio-scratch/arnau/beacon/beacon2-ri-tools-v2_test_anot/tcga-coad/genomicVariations.json mongoega:tmp/genomicVariations.json
+	docker cp /data/vault/bio-scratch/arnau/beacon/beacon2-ri-tools-v2_test_anot/tcga-coad/individuals.json mongoega:tmp/individuals.json
+	docker cp /data/vault/bio-scratch/arnau/beacon/beacon2-ri-tools-v2_test_anot/tcga-coad/runs.json mongoega:tmp/runs.json
+	docker cp /data/vault/bio-scratch/arnau/beacon/beacon2-ri-tools-v2_test_anot/tcga-coad/filtering_terms.json mongoega:tmp/filtering_terms.json
+	docker exec mongoega mongoimport --jsonArray --uri "mongodb://root:[email protected]:27020/beacon?authSource=admin" --file /tmp/datasets.json --collection datasets
+	docker exec mongoega mongoimport --jsonArray --uri "mongodb://root:[email protected]:27020/beacon?authSource=admin" --file /tmp/individuals.json --collection individuals
+	docker exec mongoega mongoimport --jsonArray --uri "mongodb://root:[email protected]:27020/beacon?authSource=admin" --file /tmp/cohorts.json --collection cohorts
+	docker exec mongoega mongoimport --jsonArray --uri "mongodb://root:[email protected]:27020/beacon?authSource=admin" --file /tmp/analyses.json --collection analyses
+	docker exec mongoega mongoimport --jsonArray --uri "mongodb://root:[email protected]:27020/beacon?authSource=admin" --file /tmp/biosamples.json --collection biosamples
+	docker exec mongoega mongoimport --jsonArray --uri "mongodb://root:[email protected]:27020/beacon?authSource=admin" --file /tmp/runs.json --collection runs
+	docker exec mongoega mongoimport --jsonArray --uri "mongodb://root:[email protected]:27020/beacon?authSource=admin" --file /tmp/genomicVariations.json --collection genomicVariations
+	docker exec mongoega mongoimport --jsonArray --uri "mongodb://root:[email protected]:27020/beacon?authSource=admin" --file /tmp/filtering_terms.json --collection filtering_terms
 	docker exec beacon python beacon/reindex.py
 	docker exec beacon python beacon/db/extract_filtering_terms.py