improved indexes

EGA-archive · Nov 15, 2024 · 53d9338 · 53d9338
1 parent 95a4702
commit 53d9338
Showing 1 changed file with 6 additions and 4 deletions.
diff --git a/beacon/reindex.py b/beacon/reindex.py
@@ -43,10 +43,12 @@
 #client.beacon.genomicVariations.create_index([("$**", "text")])
 #client.beacon.genomicVariations.create_index([("caseLevelData.biosampleId", 1)])
 #client.beacon.genomicVariations.create_index([("variation.location.interval.end.value", -1), ("variation.location.interval.start.value", 1)])
-client.beacon.genomicVariations.create_index([("variantInternalId", 1), ("caseLevelData.biosampleId", 1)])
-#client.beacon.genomicVariations.create_index([("identifiers.genomicHGVSId", 1), ("variation.location.interval.start.value", 1), ("caseLevelData.biosampleId", 1), ("variation.referenceBases", 1), ("variation.alternateBases", 1)])
-client.beacon.genomicVariations.create_index([("variation.location.interval.end.value", -1), ("variation.location.interval.start.value", 1), ("variation.referenceBases", 1), ("variation.alternateBases", 1)])
-client.beacon.genomicVariations.create_index([("molecularAttributes.geneIds", 1), ("variantInternalId", 1), ("variation.variantType", 1)])
+client.beacon.genomicVariations.create_index([("variantInternalId", 1)])
+client.beacon.genomicVariations.create_index([("variation.location.interval.start.value", 1)])
+#client.beacon.genomicVariations.create_index([("variation.location.interval.start.value", 1), ("variation.location.interval.end.value", -1)])
+client.beacon.genomicVariations.create_index([("identifiers.genomicHGVSId", 1)])
+#client.beacon.genomicVariations.create_index([("datasetId", 1), ("variation.location.interval.start.value", 1), ("variation.referenceBases", 1), ("variation.alternateBases", 1)])
+client.beacon.genomicVariations.create_index([("molecularAttributes.geneIds", 1), ("variation.variantType", 1)])
 #client.beacon.individuals.create_index([("$**", "text")])
 #client.beacon.runs.create_index([("$**", "text")])
 #collection_name = client.beacon.analyses