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@EBIvariation

EBI Variation

The Variation team from EMBL-EBI develops several bioinformatics projects such as EVA, DGVa and EGA

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  1. vcf-validator Public

    Validation suite for Variant Call Format (VCF) files, implemented using C++11

    C++ 135 41

  2. eva-pipeline Public

    Genomic variation pipeline for the European Variation Archive, implemented using Spring Batch

    Java 6 24

  3. eva-ws Public

    European Variation Archive REST web services API

    Java 6 21

  4. eva-web Public

    Web front-end for the European Variation Archive

    JavaScript 5 10

  5. eva-tools Public

    Tools compatible with the infrastructure of the European Variation Archive pipeline

    Java 1 13

  6. variation-commons Public

    Library of core components used by multiple EBI Variation projects

    Java 2 17

Repositories

Showing 10 of 49 repositories
  • CMAT Public

    ClinVar Mapping and Annotation Toolkit

    Jupyter Notebook 19 Apache-2.0 10 60 1 Updated Apr 23, 2025
  • opentargets-pharmgkb Public

    Pipeline to provide evidence strings for Open Targets from PharmGKB

    Jupyter Notebook 1 Apache-2.0 2 11 0 Updated Apr 23, 2025
  • eva-pipeline Public

    Genomic variation pipeline for the European Variation Archive, implemented using Spring Batch

    Java 6 Apache-2.0 24 0 8 Updated Apr 17, 2025
  • eva-seqcol Public

    Java implementation of the sequence collection specification to represent INSDC assemblies

    Java 1 Apache-2.0 5 10 0 Updated Apr 16, 2025
  • eva-submission Public

    Components that connect and automate main tasks in the EVA submission workflow

    Python 1 Apache-2.0 7 0 6 Updated Apr 14, 2025
  • eva-common-pyutils Public

    EBI EVA - Common Python Utilities

    Python 0 Apache-2.0 6 0 0 Updated Apr 14, 2025
  • eva-sub-cli Public

    EVA Submission Command Line Interface for Validation

    HTML 0 Apache-2.0 5 0 1 Updated Apr 8, 2025
  • eva-release-automation Public

    Automation code for the EVA RS Release

    Python 0 Apache-2.0 3 0 1 Updated Apr 8, 2025
  • eva-submission-ws Public

    Web services for EVA Submissions

    Java 0 Apache-2.0 4 0 0 Updated Apr 7, 2025
  • eva-ws Public

    European Variation Archive REST web services API

    Java 6 Apache-2.0 21 0 10 Updated Mar 25, 2025
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