Merge pull request #31 from Duke-GCB/fix-trim-galore

Fix trim galore
Duke-GCB · Aug 11, 2017 · 73999f5 · 73999f5
2 parents 4c3ff4d + 521213d
commit 73999f5
Showing 1 changed file with 5 additions and 3 deletions.
diff --git a/trim-galore/0.4.4/Dockerfile b/trim-galore/0.4.4/Dockerfile
@@ -1,6 +1,6 @@
-# trim_galore: wrapper around cutadapt and fastqc 
+# trim_galore: wrapper around cutadapt and fastqc
 # https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/
-FROM dukegcb/fastqc:v0.11.4
+FROM dukegcb/fastqc:0.11.4
 LABEL maintainer="[email protected]"
 
 # install additional requirements
@@ -29,4 +29,6 @@ WORKDIR /tmp
 RUN curl -SLO ${TRIM_GALORE_URL}/${TRIM_GALORE_RELEASE} && unzip ${TRIM_GALORE_RELEASE} -d ${DEST_DIR} && rm ${TRIM_GALORE_RELEASE}
 
 # Link executable to /usr/local/bin
-RUN ln -s /src/trim_galore/trim_galore /usr/local/bin/trim_galore
+RUN ln -s /opt/trim_galore /usr/local/bin/trim_galore
+
+CMD ["/usr/local/bin/trim_galore"]