re-precompile vignettes, test cases and readme

README.md

@@ -28,17 +28,17 @@ metadata](http://bioconductor.org).
 
 **Exploration tools:**
 
--   `deepdep()`
--   `get_dependencies()`
--   `get_downloads()`
--   `get_description()`
+- `deepdep()`
+- `get_dependencies()`
+- `get_downloads()`
+- `get_description()`
 
 **Visualisation tools:**
 
--   `plot_dependencies()`
--   `plot_downloads()`
--   `deepdep_shiny()` runs shiny application that helps to produce a
-    nice **deepdep plot**
+- `plot_dependencies()`
+- `plot_downloads()`
+- `deepdep_shiny()` runs shiny application that helps to produce a nice
+  **deepdep plot**
 
 ## Installation
 
@@ -60,13 +60,13 @@ dd <- deepdep("ggplot2", depth = 2)
 head(dd)
 ```
 
-    ##    origin    name  version    type origin_level dest_level
-    ## 1 ggplot2  digest     <NA> Imports            0          1
-    ## 2 ggplot2    glue     <NA> Imports            0          1
-    ## 3 ggplot2  gtable >= 0.1.1 Imports            0          1
-    ## 4 ggplot2 isoband     <NA> Imports            0          1
-    ## 5 ggplot2    MASS     <NA> Imports            0          1
-    ## 6 ggplot2    mgcv     <NA> Imports            0          1
+    ##    origin      name  version    type origin_level dest_level
+    ## 1 ggplot2       cli     <NA> Imports            0          1
+    ## 2 ggplot2      glue     <NA> Imports            0          1
+    ## 3 ggplot2    gtable >= 0.1.1 Imports            0          1
+    ## 4 ggplot2   isoband     <NA> Imports            0          1
+    ## 5 ggplot2 lifecycle  > 1.0.1 Imports            0          1
+    ## 6 ggplot2      MASS     <NA> Imports            0          1
 
 ``` r
 plot_dependencies(dd, "circular")
@@ -88,9 +88,9 @@ head(dd_xgboost)
 ```
 
     ##    origin       name  version    type last_day last_week last_month last_quarter last_half grand_total origin_level dest_level
-    ## 1 xgboost     Matrix >= 1.1-0 Imports     4962     49063     201226       599306   1098929     7800163            0          1
-    ## 2 xgboost data.table >= 1.9.6 Imports    40960    234207     944126      2698034   5087085    35644069            0          1
-    ## 3 xgboost   jsonlite   >= 1.0 Imports    47616    292658    1133042      4233587   7327155    58000689            0          1
+    ## 1 xgboost     Matrix >= 1.1-0 Imports     5669     78043     317730      1030313   2307023    10546730            0          1
+    ## 2 xgboost data.table >= 1.9.6 Imports    21766    196875     768217      2494588   5294010    43848884            0          1
+    ## 3 xgboost   jsonlite   >= 1.0 Imports    19405    249759    1048356      3110597   7056167    68812509            0          1
 
 ``` r
 plot_downloads(dd_xgboost)

tests/fixtures/deepdep-2.yml

@@ -14,19 +14,25 @@ http_interactions:
       reason: OK
       message: 'Success: (200) OK'
     headers:
-      server: nginx/1.4.6 (Ubuntu)
-      date: Sun, 19 Dec 2021 19:17:30 GMT
+      date: Mon, 20 Feb 2023 09:44:02 GMT
       content-type: application/json
-      content-length: '1832'
+      transfer-encoding: chunked
       connection: keep-alive
-      etag: '"41SAAZE9GL5PH2PZK3CO8R69Y"'
+      etag: W/"8M5BHOYFM4TSUL788BQRWYN0S"
       vary: Accept
-      x-couch-request-id: 343c5d6cd5
+      x-couch-request-id: 139565d00f
       x-couchdb-body-time: '0'
+      cf-cache-status: DYNAMIC
+      report-to: '{"endpoints":[{"url":"https:\/\/a.nel.cloudflare.com\/report\/v3?s=GJieOZriPexQwkurD3H0Z3LdxP55O%2B9MJ2xwTmpqWWpk4Sgz5qUXxAPEKBSLEdtKczUwdYsAwXSp9e0RUuJYRS6yomtHp3ktWZZ27siuBQ7Iz6MRrSPGIpvXN%2BTqigAK%2F9oy"}],"group":"cf-nel","max_age":604800}'
+      nel: '{"success_fraction":0,"report_to":"cf-nel","max_age":604800}'
+      server: cloudflare
+      cf-ray: 79c64d27d8ac3570-WAW
+      content-encoding: gzip
+      alt-svc: h3=":443"; ma=86400, h3-29=":443"; ma=86400
     body:
-      encoding: UTF-8
+      encoding: ''
       file: no
-      string: '{"Package":"rlang","Version":"0.4.12","Title":"Functions for Base Types
+      string: '{"Package":"rlang","Version":"1.0.6","Title":"Functions for Base Types
         and Core R and ''Tidyverse'' Features","Description":"A toolbox for working
         with base types, core R features\u000alike the condition system, and core
         ''Tidyverse'' features like tidy\u000aevaluation.","Authors@R":"c(\u000aperson(\"Lionel\",
@@ -35,14 +41,16 @@ http_interactions:
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         implementation based on Mike''s xxhashlite\"),\u000aperson(given = \"Yann\",\u000afamily
         = \"Collet\",\u000arole = \"cph\",\u000acomment = \"Author of the embedded
-        xxHash library\"),\u000aperson(\"RStudio\", role = \"cph\")\u000a)","License":"MIT
-        + file LICENSE","ByteCompile":"true","Biarch":"true","Depends":{"R":">= 3.3.0"},"Imports":{"utils":"*"},"Suggests":{"cli":"*","covr":"*","crayon":"*","glue":"*","magrittr":"*","methods":"*","pak":"*","pillar":"*","rmarkdown":"*","testthat":">=
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-        https://github.com/r-lib/rlang","BugReports":"https://github.com/r-lib/rlang/issues","Config/testthat/edition":"3","NeedsCompilation":"yes","Packaged":"2021-10-18
-        07:25:49 UTC; lionel","Author":"Lionel Henry [aut, cre],\u000aHadley Wickham
-        [aut],\u000amikefc [cph] (Hash implementation based on Mike''s xxhashlite),\u000aYann
-        Collet [cph] (Author of the embedded xxHash library),\u000aRStudio [cph]","Maintainer":"Lionel
-        Henry <[email protected]>","Repository":"CRAN","Date/Publication":"2021-10-18
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-  recorded_at: 2021-12-19 19:16:51 GMT
-  recorded_with: vcr/1.0.2, webmockr/0.8.0
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+        3.1.0","covr":"*","crayon":"*","fs":"*","glue":"*","knitr":"*","magrittr":"*","methods":"*","pillar":"*","rmarkdown":"*","stats":"*","testthat":">=
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+        UTC; lionel","Author":"Lionel Henry [aut, cre],\u000aHadley Wickham [aut],\u000amikefc
+        [cph] (Hash implementation based on Mike''s xxhashlite),\u000aYann Collet
+        [cph] (Author of the embedded xxHash library),\u000aRStudio [cph, fnd]","Maintainer":"Lionel
+        Henry <[email protected]>","Repository":"CRAN","Date/Publication":"2022-09-24
+        05:40:02 UTC","crandb_file_date":"2022-09-24 06:56:45","MD5sum":"907bc04039194b0c7edc19e9084b14fc","date":"2022-09-24T04:40:02+00:00","releases":[]}'
+  recorded_at: 2023-02-20 09:44:02 GMT
+  recorded_with: vcr/1.2.0, webmockr/0.8.2