Issues

• The hover-net training is experiencing a bug.

  bug
  Dana-Farber-AIOS/pathml#440 · Filter by author hzongyao opened on Nov 30, 2024

• Unable to Load IMC data (ome.tiff format) properly. Image data appears 0 only...

  bug
  Dana-Farber-AIOS/pathml#409 · Filter by author Aakanksha-Rana opened on Jan 24, 2024

• pachage install bug

  bug
  Dana-Farber-AIOS/pathml#406 · Filter by author Yicijiuhaobala opened on Dec 31, 2023

• AttributeError pathml.core

  Dana-Farber-AIOS/pathml#402 · Filter by author tdenize opened on Dec 13, 2023
  8

• Compatibility Query: Using PathML for X-Ray Images with Missing 'TotalPixelMatrixRows' Attribute

  bug
  Dana-Farber-AIOS/pathml#401 · Filter by author xinyuejohn opened on Dec 13, 2023

• add install instructions for windows

  enhancement
  Dana-Farber-AIOS/pathml#399 · Filter by author renato-umeton opened on Dec 12, 2023
  1

• Algorithm for Improved Spectral Unmixing with Reference Image Integration

  enhancement
  Dana-Farber-AIOS/pathml#375 · Filter by author sreekarreddydfci opened on Nov 9, 2023

• Add Installation and Setup Instructions for Mamba alongside Conda

  bug
  Dana-Farber-AIOS/pathml#370 · Filter by author sreekarreddydfci opened on Oct 23, 2023
  1

  

• Use updated openslide v4.0.0

  dependencies
  Dana-Farber-AIOS/pathml#368 · Filter by author jacob-rosenthal opened on Oct 16, 2023
  1

  

• Unable to read in all image layers in .vdi file, only index 0 is read in

  bug
  Dana-Farber-AIOS/pathml#364 · Filter by author YuyanRuan opened on Aug 7, 2023
  3

• Implement Tile Stitching Feature in Image Preprocessing

  enhancement
  Dana-Farber-AIOS/pathml#363 · Filter by author sreekarreddydfci opened on Jul 26, 2023
  

• Make a smaller docker image

  enhancement
  Dana-Farber-AIOS/pathml#357 · Filter by author renato-umeton opened on Jun 24, 2023
  

• Need assistance with running Pathml package via Colab or Docker and resolving errors

  Dana-Farber-AIOS/pathml#350 · Filter by author DRSEI opened on May 15, 2023
  6

• necrotic tissue detection for HE and multiplex imaging

  enhancement
  Dana-Farber-AIOS/pathml#345 · Filter by author YubinXie opened on Jan 26, 2023

• Support GPUs on Docker installation

  enhancement
  Dana-Farber-AIOS/pathml#343 · Filter by author renato-umeton opened on Jan 10, 2023
  

• How to implement HoVer-Net Model in TIAToolBox?

  Dana-Farber-AIOS/pathml#342 · Filter by author WilliWespe opened on Dec 15, 2022

• How to train hovernet starting with semantic-level mask image?

  enhancement
  Dana-Farber-AIOS/pathml#339 · Filter by author OmarAshkar opened on Dec 1, 2022
  3

• Deepcell segmentation without cytoplasm channel

  enhancement
  Dana-Farber-AIOS/pathml#338 · Filter by author jamesMo84 opened on Nov 10, 2022
  1

• Running preprocessing pipeline on Tiles object

  enhancement
  Dana-Farber-AIOS/pathml#332 · Filter by author PaulScemama opened on Oct 14, 2022
  15

• Can Pathml support or read in “.TMAP” formatted WSI file?

  enhancement
  Dana-Farber-AIOS/pathml#331 · Filter by author liuxiaoping2020 opened on Sep 5, 2022
  1

• best way to extract anndata ( h5ad ) from hdf5 file

  enhancement
  Dana-Farber-AIOS/pathml#330 · Filter by author afshinmoradi opened on Sep 2, 2022
  1

• Question about the StainNormalizationHE transform

  Dana-Farber-AIOS/pathml#329 · Filter by author ckv1110 opened on Aug 22, 2022
  1

• annotated-dic

  enhancement
  Dana-Farber-AIOS/pathml#326 · Filter by author afshinmoradi opened on Aug 15, 2022
  3

• Extend QuantifyMIF to also support brightfield images

  enhancement
  Dana-Farber-AIOS/pathml#318 · Filter by author jacob-rosenthal opened on Jun 22, 2022

• Rename the default kernel in docker & create intro splash page for 127.0.0.1:8888

  documentationenhancement
  Dana-Farber-AIOS/pathml#317 · Filter by author renato-umeton opened on Jun 21, 2022
  1