Issue 147 postgres integration #1352
Workflow file for this run
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| name: Basic Tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| jobs: | |
| shellcheck: | |
| runs-on: ubuntu-latest | |
| if: github.event_name != 'push' || github.repository == 'DIRACGrid/diracx' | |
| timeout-minutes: 30 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Run shellcheck | |
| # Excluded codes related to sourcing files | |
| # SC1090: Can't follow non-constant source | |
| # SC1091: Not following sourced file | |
| run: | | |
| find -name '*.sh' -print0 | xargs -0 -n1 shellcheck --exclude=SC1090,SC1091 --external-source | |
| unittest: | |
| name: Unit test - ${{ matrix.package }} | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - package: "./diracx-core" | |
| dependencies: "./diracx-testing" | |
| - package: "./diracx-db" | |
| dependencies: "./diracx-testing ./diracx-core" | |
| - package: "./diracx-routers" | |
| dependencies: "./diracx-testing ./diracx-core ./diracx-db" | |
| - package: "./diracx-client" | |
| dependencies: "./diracx-testing ./diracx-core" | |
| - package: "./diracx-api" | |
| dependencies: "./diracx-testing ./diracx-core ./diracx-client" | |
| - package: "./diracx-cli" | |
| dependencies: "./diracx-testing ./diracx-core ./diracx-client ./diracx-api" | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| # TODO: Use a conda environment file used for the diracx/base container image | |
| environment-name: test-env | |
| environment-file: environment.yml | |
| init-shell: bash | |
| post-cleanup: 'all' | |
| - name: Set up environment | |
| run: | | |
| pip install pytest-github-actions-annotate-failures | |
| # Note: DIRAC will install pretty much everything | |
| # from diracx so installing just the dependency may | |
| # be a bit useless | |
| pip install git+https://github.com/DIRACGrid/DIRAC.git@integration | |
| pip install ${{ matrix.dependencies }} | |
| - name: Run pytest | |
| run: | | |
| cd ${{ matrix.package }} | |
| pip install .[testing] | |
| pytest --cov-report=xml:coverage.xml --junitxml=report.xml | |
| - name: Run mypy | |
| run: | | |
| pip install mypy ${{ matrix.package }}[types] | |
| mypy ${{ matrix.package }}/src | |
| - name: Upload coverage report | |
| uses: codecov/[email protected] | |
| pytest-integration: | |
| name: Integration test - ${{ matrix.dbName }} | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - dbName: "MySQL" | |
| cliOption: "" | |
| - dbName: "PostgreSQL" | |
| cliOption: "--postgres" | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| environment-file: environment.yml | |
| init-shell: bash | |
| post-cleanup: 'all' | |
| - name: Set up environment | |
| run: | | |
| pip install pytest-github-actions-annotate-failures | |
| pip install git+https://github.com/DIRACGrid/DIRAC.git@integration | |
| pip install ./diracx-core/[testing] ./diracx-api/[testing] ./diracx-cli/[testing] ./diracx-client/[testing] ./diracx-routers/[testing] ./diracx-db/[testing] ./diracx-testing/ | |
| - name: Start demo | |
| run: | | |
| git clone -b diracx-issue-147-postgres-integration https://github.com/AcquaDiGiorgio/diracx-charts.git ../diracx-charts | |
| ../diracx-charts/run_demo.sh ${{ matrix.cliOption }} --enable-open-telemetry --enable-coverage --exit-when-done --set-value developer.autoReload=false --ci-values ../diracx-charts/demo/ci_values.yaml $PWD | |
| - name: Debugging information | |
| run: | | |
| DIRACX_DEMO_DIR=$PWD/../diracx-charts/.demo | |
| export KUBECONFIG=${DIRACX_DEMO_DIR}/kube.conf | |
| export PATH=${DIRACX_DEMO_DIR}:$PATH | |
| kubectl get pods | |
| for pod_name in $(kubectl get pods -o json | jq -r '.items[] | .metadata.name' | grep -vE '(dex|minio|mysql|postgres|rabbitmq|opensearch)'); do | |
| echo "${pod_name}" | |
| kubectl describe pod/"${pod_name}" || true | |
| for container_name in $(kubectl get pods $pod_name -o jsonpath='{.spec.initContainers[*].name} {.spec.containers[*].name}'); do | |
| echo $pod_name $container_name | |
| kubectl logs "${pod_name}" -c "${container_name}" || true | |
| done | |
| done | |
| if [ ! -f "${DIRACX_DEMO_DIR}/.success" ]; then | |
| cat "${DIRACX_DEMO_DIR}/.failed" | |
| exit 1 | |
| fi | |
| - name: Run pytest | |
| run: | | |
| pytest --demo-dir=../diracx-charts/ --cov-report=xml:coverage-pytest.xml --junitxml=report.xml | |
| - name: Collect demo coverage | |
| run: | | |
| DIRACX_DEMO_DIR=$PWD/../diracx-charts/.demo | |
| export KUBECONFIG=${DIRACX_DEMO_DIR}/kube.conf | |
| export PATH=${DIRACX_DEMO_DIR}:$PATH | |
| # Shutdown the pods so we collect coverage data | |
| for pod_name in $(kubectl get pods -o json | jq -r '.items[] | .metadata.name' | grep -vE '(dex|minio|mysql|rabbitmq|opensearch)'); do | |
| kubectl delete pod/"${pod_name}" | |
| done | |
| # Combine the coverage data from the demo and make an XML report | |
| coverage_data=$(mktemp) | |
| sudo chown -R $(id -u) "${DIRACX_DEMO_DIR}"/coverage-reports/ | |
| coverage combine --keep --data-file "${coverage_data}" "${DIRACX_DEMO_DIR}"/coverage-reports/* | |
| # coverage can't handle having multiple src directories, so we need to make a fake one with symlinks | |
| fake_module=$(mktemp -d) | |
| mkdir -p "${fake_module}/src/diracx" | |
| for fn in "${PWD}"/*/src/diracx/*; do | |
| ln -sf "${fn}" "${fake_module}/src/diracx/$(basename "${fn}")" | |
| done | |
| sed -i "s@source =@source =\n ${fake_module}/src@g" .coveragerc | |
| cat .coveragerc | |
| coverage xml -o coverage-demo.xml --data-file "${coverage_data}" | |
| - name: Upload coverage report | |
| uses: codecov/[email protected] | |
| with: | |
| files: ./coverage-pytest.xml,./coverage-demo.xml | |
| client-generation: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| environment-file: environment.yml | |
| init-shell: bash | |
| post-cleanup: 'all' | |
| - name: Set up environment | |
| run: | | |
| micromamba install -c conda-forge nodejs pre-commit | |
| pip install git+https://github.com/DIRACGrid/DIRAC.git@integration | |
| pip install ./diracx-core/ ./diracx-api/ ./diracx-cli/ -e ./diracx-client/[testing] ./diracx-routers/[testing] ./diracx-db/ ./diracx-testing/ | |
| npm install -g autorest | |
| - name: Run autorest | |
| run: | | |
| autorest --python --help | |
| $HOME/.autorest/\@autorest_python\@*/node_modules/\@autorest/python/venv/bin/python -m pip install --upgrade setuptools | |
| pytest --no-cov --regenerate-client diracx-client/tests/test_regenerate.py |