change dependencies around

CreRecombinase · May 7, 2020 · 00abf3b · 00abf3b
1 parent 0d486b7
commit 00abf3b
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Showing 19 changed files with 1,087 additions and 267 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,4 +1,4 @@
-Package: FGEM
+Package: fgem
 Type: Package
 Title: R package for Functional Genomics using Expectation Maximization (FGEM)
 Version: 0.1.0
@@ -8,10 +8,20 @@ Description: Given a list of gene-level bayes factors and a series of annotation
 License: GPL (>= 2)
 LazyData: TRUE
 Imports:
-    Rcpp (>= 0.12.5),RcppArmadillo,dplyr,tidyr,SQUAREM,magrittr
+    Rcpp (>= 0.12.5),
+    RcppArmadillo,
+    dplyr,
+    tidyr,
+    turboEM,
+    magrittr,
+    speedglm,
+    purrr,
+    Matrix
 LinkingTo:
     Rcpp,RcppArmadillo
 Suggests: knitr,
     rmarkdown
 VignetteBuilder: knitr
-RoxygenNote: 6.0.1
+RoxygenNote: 7.1.0
+Depends: 
+    R (>= 2.10)
diff --git a/FGEM.Rproj b/FGEM.Rproj
@@ -15,3 +15,4 @@ LaTeX: pdfLaTeX
 BuildType: Package
 PackageUseDevtools: Yes
 PackageInstallArgs: --no-multiarch --with-keep.source
+PackageRoxygenize: rd,collate,namespace
diff --git a/NAMESPACE b/NAMESPACE
@@ -1,4 +1,9 @@
-exportPattern("^[[:alpha:]]+")
-importFrom(Rcpp, evalCpp)
+# Generated by roxygen2: do not edit by hand
+
+export("%>%")
+export(FGEM)
+export(FGEM_df)
+export(FGEM_marginal)
+importFrom(Rcpp,evalCpp)
 importFrom(magrittr,"%>%")
-useDynLib(FGEM)
+useDynLib(fgem)