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ConesaLab - Genomics of gene expression

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  1. SQANTI3 SQANTI3 Public

    Tool for the Quality Control of Long-Read Defined Transcriptomes

    HTML 221 54

  2. MultiPower MultiPower Public

    Statistical power studies for multi-omics experiments.

    R 31 10

  3. tappAS tappAS Public

    This repository contains the source code for the tappAS application. See README for details.

    Java 16 3

  4. acorde acorde Public

    Isoform co-usage networks from single-cell RNA-seq data

    HTML 16 4

  5. SQANTI SQANTI Public

    Python 12 3

  6. TCR_nextflow TCR_nextflow Public

    Nextflow 12 2

Repositories

Showing 10 of 28 repositories
  • SQANTI3 Public

    Tool for the Quality Control of Long-Read Defined Transcriptomes

    HTML 221 GPL-3.0 54 14 0 Updated May 1, 2025
  • courses-SQANTI_verse Public
    HTML 0 0 0 0 Updated May 1, 2025
  • IsoAnnot Public
    Python 6 0 1 0 Updated Apr 30, 2025
  • paintomics4 Public
    JavaScript 7 GPL-3.0 0 0 0 Updated Apr 23, 2025
  • MOSim Public

    Bulk and single-cell Multi-Omics ground truth Simulator in R

    R 9 1 1 0 Updated Apr 2, 2025
  • Github-stats-saver Public

    Scripts to store downloads or otherwise relevant metrics of a program from different repositories

    Python 2 GPL-3.0 1 0 0 Updated Feb 17, 2025
  • SQANTI_reads_ComputationalEfficiency_plots Public

    Storage of scripts to reproduce the computational efficiency evaluation in Keil, Monzó, McIntyre, Conesa. 2025. SQANTI-reads

    Shell 0 0 0 0 Updated Jan 31, 2025
  • MultiPower Public

    Statistical power studies for multi-omics experiments.

    R 31 10 3 0 Updated Jan 18, 2025
  • beanTFBSs Public
    Python 0 0 0 0 Updated Oct 28, 2024
  • SQANTI-SIM Public

    A simulator of controlled transcript novelty for lrRNA-seq benchmark

    HTML 7 GPL-3.0 1 1 0 Updated Apr 29, 2024
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