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UpdateLogs/index.html

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+      3.4.45 20240509
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 <h1 id="update-logs">Update Logs</h1>
+<h2 id="3445-20240509">3.4.45 20240509</h2>
+<ul>
+<li>changed python version requiremnents to &gt;=3.9, &lt;3.11</li>
+<li>updated the version of pysam to v0.22.1</li>
+<li>fixed bug for status code when flipping statistics</li>
+</ul>
+<h2 id="3444-20240424">3.4.44 20240424</h2>
+<ul>
+<li>fixed bug when POS &gt; sequence length for check_ref()</li>
+<li>vectorized normalize_allele() </li>
+</ul>
 <h2 id="3443-20240403">3.4.43 20240403</h2>
 <ul>
 <li><a href="https://github.com/Cloufield/gwaslab/pull/86">Added cache to speedup strand inference</a> (credit to @sup3rgiu Mr. Andrea)</li>

index.html

@@ -2178,7 +2178,7 @@ <h1 id="gwaslab">GWASLab</h1>
 <p>Warning: Known issues of GWASLab are summarized in <a href="https://cloufield.github.io/gwaslab/KnownIssues/">https://cloufield.github.io/gwaslab/KnownIssues/</a> .</p>
 <h2 id="install">Install</h2>
 <h3 id="install-via-pip">install via pip</h3>
-<div class="language-text highlight"><pre><span></span><code><span id="__span-0-1"><a id="__codelineno-0-1" name="__codelineno-0-1" href="#__codelineno-0-1"></a>pip install gwaslab==3.4.43
+<div class="language-text highlight"><pre><span></span><code><span id="__span-0-1"><a id="__codelineno-0-1" name="__codelineno-0-1" href="#__codelineno-0-1"></a>pip install gwaslab==3.4.45
 </span></code></pre></div>
 <div class="language-python highlight"><pre><span></span><code><span id="__span-1-1"><a id="__codelineno-1-1" name="__codelineno-1-1" href="#__codelineno-1-1"></a><span class="kn">import</span> <span class="nn">gwaslab</span> <span class="k">as</span> <span class="nn">gl</span>
 </span><span id="__span-1-2"><a id="__codelineno-1-2" name="__codelineno-1-2" href="#__codelineno-1-2"></a><span class="c1"># load plink2 output</span>
@@ -2211,7 +2211,7 @@ <h3 id="install-in-conda-environment">install in conda environment</h3>
 <p>Create a Python 3.9 environment and install gwaslab using pip:</p>
 <div class="language-text highlight"><pre><span></span><code><span id="__span-2-1"><a id="__codelineno-2-1" name="__codelineno-2-1" href="#__codelineno-2-1"></a>conda env create -n gwaslab_test -c conda-forge python=3.9
 </span><span id="__span-2-2"><a id="__codelineno-2-2" name="__codelineno-2-2" href="#__codelineno-2-2"></a>conda activate gwaslab
-</span><span id="__span-2-3"><a id="__codelineno-2-3" name="__codelineno-2-3" href="#__codelineno-2-3"></a>pip install gwaslab==3.4.43
+</span><span id="__span-2-3"><a id="__codelineno-2-3" name="__codelineno-2-3" href="#__codelineno-2-3"></a>pip install gwaslab==3.4.45
 </span></code></pre></div>
 <p>or create a new environment using yml file <a href="https://github.com/Cloufield/gwaslab/blob/main/environment_3.4.40.yml">environment_3.4.40.yml</a></p>
 <div class="language-text highlight"><pre><span></span><code><span id="__span-3-1"><a id="__codelineno-3-1" name="__codelineno-3-1" href="#__codelineno-3-1"></a>conda env create -n gwaslab -f environment_3.4.40.yml