Delete submission endpoint

CHANGELOG.md

@@ -1,5 +1,7 @@
 
 ## [unreleased]
+### Added
+- Delete submission endpoint, with json example (under demo files)
 ### Changed
 - Updated API submission schema to the latest available on `ncbi/clinvar` GitHub pages
 - Modified the json submission example to use one from the ClinVar GitHib repo (`sample_clinical_significance_hgvs_submission.json`)

preClinVar/demo/delete_submission_example.json

@@ -0,0 +1,9 @@
+{
+  "clinvarDeletion": {
+    "accessionSet": [
+      {
+        "accession": "SCV005395965"
+      }
+    ]
+  }
+}

preClinVar/main.py

@@ -10,7 +10,11 @@
 
 from preClinVar.__version__ import VERSION
 from preClinVar.build import build_header, build_submission
-from preClinVar.constants import DRY_RUN_SUBMISSION_URL, SUBMISSION_URL, VALIDATE_SUBMISSION_URL
+from preClinVar.constants import (
+    DRY_RUN_SUBMISSION_URL,
+    SUBMISSION_URL,
+    VALIDATE_SUBMISSION_URL,
+)
 from preClinVar.file_parser import csv_lines, file_fields_to_submission, tsv_lines
 from preClinVar.validate import validate_submission
 
@@ -233,3 +237,30 @@ async def status(api_key: str = Form(), submission_id: str = Form()) -> JSONResp
         status_code=actions_resp.status_code,
         content=actions_resp.json(),
     )
+
+
+@app.post("/delete")
+async def delete(api_key: str = Form(), clinvar_accession: str = Form()):
+    """A proxy to the dry run submission ClinVar API endpoint"""
+    # Create a submission header
+    header = build_header(api_key)
+
+    # Create a submission deletion object
+    delete_obj = {"clinvarDeletion": {"accessionSet": [{"accession": clinvar_accession}]}}
+
+    data = {
+        "actions": [
+            {
+                "type": "AddData",
+                "targetDb": "clinvar",
+                "data": {"content": delete_obj},
+            }
+        ]
+    }
+    # And send a POST request to the API
+    resp = requests.post(SUBMISSION_URL, data=json.dumps(data), headers=header)
+
+    return JSONResponse(
+        status_code=resp.status_code,
+        content=resp.json(),
+    )