feat(black)

[henrikstranneheim]

Added

• Added Black actions
• Add pre-commit, black,isort and ruff

Changed

• Update actions versions

Fixed

Steps to consider while deploying

• Configuration changes:
• Documentation updates:
• Inform users by email:

Review:

• Code approved by
• Tests executed on stage by: (Document the test done with screen shots and description.)
• "Merge and deploy" approved by

This version is a:

• MAJOR - when you make incompatible API changes
• MINOR - when you add functionality in a backwards compatible manner
• PATCH - when you make backwards compatible bug fixes or documentation/instructions

[Vince-janv]

Nice 👍

[henrikstranneheim]

API 👍

iseq.clinical@cg-services-stage ~]$ systemctl --user status genotype-api@add-black
● [email protected] - Genotype-api
   Loaded: loaded (/home/hiseq.clinical/.config/systemd/user/[email protected]; disabled; vendor preset: enabled)
   Active: active (running) since Wed 2024-03-06 09:42:31 CET; 49s ago
  Process: 3534793 ExecStartPre=/usr/bin/podman pull ${CONTAINER_URL}:add-black (code=exited, status=0/SUCCESS)
 Main PID: 3534875 (podman)
   CGroup: /user.slice/user-2191.slice/[email protected]/genotype\x2dapi.slice/[email protected]
           ├─3534875 /usr/bin/podman run --expose 25000 --security-opt label=disable --env-file /var/cg-data/container-env//genotype-api.env --replace --init --tz local --name genotype-api-add-black -p 7>
           ├─3534890 /usr/bin/fuse-overlayfs -o lowerdir=/home/hiseq.clinical/.local/share/containers/storage/overlay/l/42FTNKXGRATXNO5YEUEHS3D6ZH:/home/hiseq.clinical/.local/share/containers/storage/ove>
           ├─3534892 /usr/bin/slirp4netns --disable-host-loopback --mtu=65520 --enable-sandbox --enable-seccomp --enable-ipv6 -c -r 3 -e 4 --netns-type=path /run/user/2191/netns/netns-13f26804-e0fc-1f80->
           ├─3534895 rootlessport
           ├─3534901 rootlessport-child
           ├─3534910 /usr/bin/conmon --api-version 1 -c 0c8c8799e8ab5ecaec91cee3551f8a2fd9cc6dacc14daa08ca409e78ff790dc1 -u 0c8c8799e8ab5ecaec91cee3551f8a2fd9cc6dacc14daa08ca409e78ff790dc1 -r /usr/bin/ru>
           └─0c8c8799e8ab5ecaec91cee3551f8a2fd9cc6dacc14daa08ca409e78ff790dc1
             ├─3534921 /run/podman-init -- /bin/sh -c gunicorn     --workers=$GUNICORN_WORKERS     --bind=$GUNICORN_BIND      --threads=$GUNICORN_THREADS     --timeout=$GUNICORN_TIMEOUT     --proxy-proto>
             ├─3534933 /bin/sh -c gunicorn     --workers=$GUNICORN_WORKERS     --bind=$GUNICORN_BIND      --threads=$GUNICORN_THREADS     --timeout=$GUNICORN_TIMEOUT     --proxy-protocol     --forwarded->
             ├─3534934 /usr/local/bin/python /usr/local/bin/gunicorn --workers=4 --bind=0.0.0.0:8000 --threads=4 --timeout=400 --proxy-protocol --forwarded-allow-ips=10.0.2.100,127.0.0.1 --log-syslog --a>
             ├─3534935 /usr/local/bin/python /usr/local/bin/gunicorn --workers=4 --bind=0.0.0.0:8000 --threads=4 --timeout=400 --proxy-protocol --forwarded-allow-ips=10.0.2.100,127.0.0.1 --log-syslog --a>
             ├─3534936 /usr/local/bin/python /usr/local/bin/gunicorn --workers=4 --bind=0.0.0.0:8000 --threads=4 --timeout=400 --proxy-protocol --forwarded-allow-ips=10.0.2.100,127.0.0.1 --log-syslog --a>
             ├─3534937 /usr/local/bin/python /usr/local/bin/gunicorn --workers=4 --bind=0.0.0.0:8000 --threads=4 --timeout=400 --proxy-protocol --forwarded-allow-ips=10.0.2.100,127.0.0.1 --log-syslog --a>
             └─3534938 /usr/local/bin/python /usr/local/bin/gunicorn --workers=4 --bind=0.0.0.0:8000 --threads=4 --timeout=400 --proxy-protocol --forwarded-allow-ips=10.0.2.100,127.0.0.1 --log-syslog --a>

Mar 06 09:42:33 cg-services-stage.scilifelab.se podman[3534875]: [2024-03-06 09:42:33 +0100] [11] [INFO] Waiting for application startup.
Mar 06 09:42:33 cg-services-stage.scilifelab.se podman[3534875]: [2024-03-06 09:42:33 +0100] [12] [INFO] Waiting for application startup.
Mar 06 09:42:33 cg-services-stage.scilifelab.se podman[3534875]: [2024-03-06 09:42:33 +0100] [11] [INFO] Application startup complete.
Mar 06 09:42:33 cg-services-stage.scilifelab.se podman[3534875]: [2024-03-06 09:42:33 +0100] [12] [INFO] Application startup complete.
Mar 06 09:42:33 cg-services-stage.scilifelab.se podman[3534875]: [2024-03-06 09:42:33 +0100] [10] [INFO] Application startup complete.
Mar 06 09:42:33 cg-services-stage.scilifelab.se podman[3534875]: [2024-03-06 09:42:33 +0100] [9] [INFO] Application startup complete.
Mar 06 09:43:06 cg-services-stage.scilifelab.se podman[3534875]: 130.237.250.5:0 - "OPTIONS /samples/?skip=0&limit=100&incomplete=false& HTTP/1.0" 200
Mar 06 09:43:07 cg-services-stage.scilifelab.se podman[3534875]: 130.237.250.5:0 - "GET /samples/?skip=0&limit=100&incomplete=false& HTTP/1.0" 200
Mar 06 09:43:11 cg-services-stage.scilifelab.se podman[3534875]: 130.237.250.5:0 - "OPTIONS /users/ HTTP/1.0" 200
Mar 06 09:43:11 cg-services-stage.scilifelab.se podman[3534875]: 130.237.250.5:0 - "GET /users/ HTTP/1.0" 200

[henrikstranneheim]

Nothing to deploy