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Clinical-Genomics · Aug 6, 2024 · 4b33915 · 4b33915
1 parent c692fe0
commit 4b33915
Showing 1 changed file with 29 additions and 7 deletions.
diff --git a/genotype_api/services/endpoint_services/plate_service.py b/genotype_api/services/endpoint_services/plate_service.py
@@ -11,10 +11,22 @@
 from pydantic import EmailStr
 
 from genotype_api.constants import Types
-from genotype_api.database.filter_models.plate_models import PlateSignOff, PlateOrderParams
+from genotype_api.database.filter_models.plate_models import (
+    PlateSignOff,
+    PlateOrderParams,
+)
 from genotype_api.database.models import Plate, Analysis, User, Sample
-from genotype_api.dto.plate import PlateResponse, UserOnPlate, AnalysisOnPlate, SampleStatus
-from genotype_api.exceptions import PlateNotFoundError, UserNotFoundError, PlateExistsError
+from genotype_api.dto.plate import (
+    PlateResponse,
+    UserOnPlate,
+    AnalysisOnPlate,
+    SampleStatus,
+)
+from genotype_api.exceptions import (
+    PlateNotFoundError,
+    UserNotFoundError,
+    PlateExistsError,
+)
 from genotype_api.file_parsing.excel import GenotypeAnalysis
 from genotype_api.file_parsing.files import check_file
 from genotype_api.services.endpoint_services.base_service import BaseService
@@ -85,8 +97,12 @@ def upload_plate(self, file: UploadFile) -> None:
         plate_obj = Plate(plate_id=plate_id)
         plate: Plate = self.store.create_plate(plate=plate_obj)
         new_plate: Plate = self.store.get_plate_by_plate_id(plate_id=plate_id)
-        analyses: list[Analysis] = list(excel_parser.generate_analyses(plate_id=new_plate.id))
-        self.store.check_analyses_objects(analyses=analyses, analysis_type=Types.GENOTYPE)
+        analyses: list[Analysis] = list(
+            excel_parser.generate_analyses(plate_id=new_plate.id)
+        )
+        self.store.check_analyses_objects(
+            analyses=analyses, analysis_type=Types.GENOTYPE
+        )
         self.store.create_analyses_samples(analyses=analyses)
         for analysis in analyses:
             self.store.create_analysis(analysis=analysis)
@@ -97,7 +113,11 @@ def upload_plate(self, file: UploadFile) -> None:
         self.store.refresh_plate(plate=plate)
 
     def update_plate_sign_off(
-        self, plate_id: int, user_email: EmailStr, method_document: str, method_version: str
+        self,
+        plate_id: int,
+        user_email: EmailStr,
+        method_document: str,
+        method_version: str,
     ) -> PlateResponse:
         plate: Plate = self.store.get_plate_by_id(plate_id=plate_id)
         if not plate:
@@ -131,7 +151,9 @@ def delete_plate(self, plate_id) -> list[int]:
         plate = self.store.get_plate_by_id(plate_id=plate_id)
         if not plate:
             raise PlateNotFoundError
-        analyses: list[Analysis] = self.store.get_analyses_by_plate_id(plate_id=plate_id)
+        analyses: list[Analysis] = self.store.get_analyses_by_plate_id(
+            plate_id=plate_id
+        )
         analysis_ids: list[int] = [analyse.id for analyse in analyses]
         for analysis in analyses:
             self.store.delete_analysis(analysis=analysis)