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fix pyproj
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ChrOertlin committed Mar 8, 2024
1 parent 08d5663 commit 4421a31
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9 changes: 5 additions & 4 deletions README.md
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Expand Up @@ -11,7 +11,8 @@ install [poetry]
```
git clone https://github.com/Clinical-Genomics/genotype-api
cd genotype-api
pip install -e . -r requirements.txt
pip install poetry
poetry install
```

## Usage
Expand All @@ -26,14 +27,14 @@ Go to `http://localhost:8000/docs` and test the API
## Authorization


There is currently no working demo avalible.
To autorize you'l need to provide a valid ID-token.
There is currently no working demo available.
To autorise you'll need to provide a valid ID-token.

## Description

After sample prep a small part of the DNA is sent to MAF where they do SNP calling with a orthogonal method for a predefined set of SNPs. MAF also to gender prediction based on their result. The result from MAF is sent back as an excel sheet and this get uploaded to genotype via the `Upload Plate`-endpoint.

The same samples get sequenced and genotyped inhouse and the result of this is uploaded in the VCF format via the `Upload Sequence`-endpoint.
The same samples get sequenced and genotyped in-house and the result of this is uploaded in the VCF format via the `Upload Sequence`-endpoint.

The two analyses for each sample are then compared to check for anomalies.

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4 changes: 2 additions & 2 deletions pyproject.toml
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@@ -1,8 +1,8 @@
[tool.poetry]
name = "genotype-api"
name = "genotype_api"
version = "2.0.8"
description = "Genotype is a tool to validate integrity and sex of samples."
authors = ["Your Name <[email protected]>"]
authors = ["Måns Magnusson","Maya Brandi"]
license = "MIT License"
readme = "README.md"

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