feat(pep_0604):

Clinical-Genomics · Mar 13, 2024 · 038e60c · 038e60c
1 parent f221f1b
commit 038e60c
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Showing 2 changed files with 33 additions and 20 deletions.
diff --git a/genotype_api/api/endpoints/plates.py b/genotype_api/api/endpoints/plates.py
@@ -5,24 +5,29 @@
 from pathlib import Path
 from typing import Literal
 
-from fastapi import (APIRouter, Depends, File, HTTPException, Query,
-                     UploadFile, status)
+from fastapi import APIRouter, Depends, File, HTTPException, Query, UploadFile, status
 from fastapi.responses import JSONResponse
 from sqlalchemy import asc, desc
 from sqlmodel import Session, select
 from sqlmodel.sql.expression import Select, SelectOfScalar
 
-from genotype_api.database.crud.create import (create_analyses_sample_objects,
-                                               create_plate)
-from genotype_api.database.crud.read import (check_analyses_objects,
-                                             get_analyses_from_plate,
-                                             get_plate, get_user_by_email)
+from genotype_api.database.crud.create import create_analyses_sample_objects, create_plate
+from genotype_api.database.crud.read import (
+    check_analyses_objects,
+    get_analyses_from_plate,
+    get_plate,
+    get_user_by_email,
+)
 from genotype_api.database.crud.update import refresh_sample_status
-from genotype_api.database.models import (Analysis, Plate, PlateCreate,
-                                          PlateReadWithAnalyses,
-                                          PlateReadWithAnalysisDetail,
-                                          PlateReadWithAnalysisDetailSingle,
-                                          User)
+from genotype_api.database.models import (
+    Analysis,
+    Plate,
+    PlateCreate,
+    PlateReadWithAnalyses,
+    PlateReadWithAnalysisDetail,
+    PlateReadWithAnalysisDetailSingle,
+    User,
+)
 from genotype_api.database.session_handler import get_session
 from genotype_api.file_parsing.excel import GenotypeAnalysis
 from genotype_api.file_parsing.files import check_file

diff --git a/genotype_api/api/endpoints/samples.py b/genotype_api/api/endpoints/samples.py
@@ -10,15 +10,23 @@
 
 import genotype_api.database.crud.create
 from genotype_api.constants import SEXES
-from genotype_api.database.crud.read import (get_commented_samples,
-                                             get_incomplete_samples,
-                                             get_plate_samples, get_sample,
-                                             get_samples,
-                                             get_status_missing_samples)
+from genotype_api.database.crud.read import (
+    get_commented_samples,
+    get_incomplete_samples,
+    get_plate_samples,
+    get_sample,
+    get_samples,
+    get_status_missing_samples,
+)
 from genotype_api.database.crud.update import refresh_sample_status
-from genotype_api.database.models import (Analysis, Sample, SampleRead,
-                                          SampleReadWithAnalysisDeep, User,
-                                          compare_genotypes)
+from genotype_api.database.models import (
+    Analysis,
+    Sample,
+    SampleRead,
+    SampleReadWithAnalysisDeep,
+    User,
+    compare_genotypes,
+)
 from genotype_api.database.session_handler import get_session
 from genotype_api.match import check_sample
 from genotype_api.models import MatchCounts, MatchResult, SampleDetail