Merge branch 'master' into add-managed-variant-scout-export

Author: henrikstranneheim

.bumpversion.cfg

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 54.1.2
+current_version = 54.1.3
 commit = True
 tag = True
 tag_name = v{new_version}

cg/__init__.py

@@ -1,2 +1,2 @@
 __title__ = "cg"
-__version__ = "54.1.2"
+__version__ = "54.1.3"

cg/constants/constants.py

@@ -40,7 +40,7 @@ class CaseActions(StrEnum):
 
     @classmethod
     def actions(cls) -> list[str]:
-        return list(cls)
+        return list(map(lambda action: action.value, cls))
 
 
 CONTAINER_OPTIONS = ("Tube", "96 well plate", "No container")
@@ -71,7 +71,7 @@ class FlowCellStatus(StrEnum):
 
     @classmethod
     def statuses(cls) -> list[str]:
-        return list(cls)
+        return list(map(lambda status: status.value, cls))
 
 
 class AnalysisType(StrEnum):

cg/constants/gene_panel.py

@@ -45,7 +45,7 @@ class GenePanelMasterList(StrEnum):
     @classmethod
     def get_panel_names(cls, panels=None) -> list[str]:
         """Return requested panel names from the Master list, or all panels if none are specified."""
-        return list(panels) if panels else list(cls)
+        return list(panels) if panels else list(map(lambda panel: panel.value, cls))
 
     @staticmethod
     def collaborators() -> set[str]:

cg/constants/housekeeper_tags.py

@@ -18,7 +18,7 @@ class AlignmentFileTag(StrEnum):
 
     @classmethod
     def file_tags(cls) -> list[str]:
-        return list(cls)
+        return list(map(lambda tag: tag.value, cls))
 
 
 class ArchiveTag(StrEnum):

cg/meta/workflow/fluffy.py

@@ -40,7 +40,7 @@ class FluffySampleSheetHeaders(StrEnum):
 
     @classmethod
     def headers(cls) -> list[str]:
-        return list(cls)
+        return list(map(lambda header: header.value, cls))
 
 
 class FluffySample(BaseModel):

pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "poetry.core.masonry.api"
 
 [tool.poetry]
 name = "cg"
-version = "54.1.2"
+version = "54.1.3"
 description = "Clinical Genomics command center"
 authors = ["Clinical Genomics <[email protected]>"]
 readme = "README.md"