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lines changed Original file line number Diff line number Diff line change @@ -38,7 +38,7 @@ def store_downsampled_fastq_files_from_dir(
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"""
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fastq_file_paths : list [Path ] = get_files_matching_pattern (
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directory = Path (fastq_file_output_directory ),
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- pattern = f"*{ sample_id .split (sep = '_ ' )[0 ]} *.{ SequencingFileTag .FASTQ } .gz" ,
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+ pattern = f"*{ sample_id .split (sep = 'DS ' )[0 ]} *.{ SequencingFileTag .FASTQ } .gz" ,
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)
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if not fastq_file_paths :
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raise FileNotFoundError (
Original file line number Diff line number Diff line change @@ -70,7 +70,7 @@ def downsample_sample(
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"store" ,
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help = "Store the downsampled fastq files in housekeeper.\n "
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"Make sure the downsample sbtach job has finished before using this command! \n "
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- "Usage: cg downsample store ACC123145_2.0M ACC1231_30.0M " ,
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+ "Usage: cg downsample store ACC123145DS2C0M ACC1231DS30C0M " ,
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)
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@click .argument ("sample_ids" , type = str , nargs = - 1 )
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@click .pass_obj
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