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Connects to #1287. Snovault conversion #1325

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Connects to #1287. Snovault conversion #1325

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Commits on Jan 26, 2017

  1. remove contentbase; update versions and such

    @mrmin123
    mrmin123 committed Jan 26, 2017
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  2. rename contentbase namespace to snovault

    @mrmin123
    mrmin123 committed Jan 26, 2017
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  3. update database connection

    @mrmin123
    mrmin123 committed Jan 26, 2017
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  4. fix references to snovault

    @mrmin123
    mrmin123 committed Jan 26, 2017
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  5. disable audits; update beautifulsoup version

    @mrmin123
    mrmin123 committed Jan 26, 2017
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  6. remove es_index_listener; revise setup

    @mrmin123
    mrmin123 committed Jan 26, 2017
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  7. transfer dev_servers from clincoded to snovault

    @mrmin123
    mrmin123 committed Jan 26, 2017
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  8. update upgrade scripts, loadxl, setup, and schema; provisionalClassif… 

    …ication and extra_evidence still problematic
    @mrmin123
    mrmin123 committed Jan 26, 2017
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  9. undo test gdm data

    @mrmin123
    mrmin123 committed Jan 26, 2017
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  10. update schema

    @mrmin123
    mrmin123 committed Jan 26, 2017
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  11. revert user.py

    @mrmin123
    mrmin123 committed Jan 26, 2017
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  12. Merge remote-tracking branch 'origin/dev' into mc_snovault

    @mrmin123
    mrmin123 committed Jan 26, 2017
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Commits on Jan 30, 2017

  1. remove potentially unneeded code; fix display of home page

    @mrmin123
    mrmin123 committed Jan 30, 2017
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Commits on Feb 2, 2017

  1. get login half-working

    @mrmin123
    mrmin123 committed Feb 2, 2017
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Commits on Feb 7, 2017

  1. get subsequent pages to load

    @mrmin123
    mrmin123 committed Feb 7, 2017
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  2. clean up curator_page

    @mrmin123
    mrmin123 committed Feb 7, 2017
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  3. clean up mixin

    @mrmin123
    mrmin123 committed Feb 7, 2017
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Commits on Feb 10, 2017

  1. Revert "clean up mixin" 

    This reverts commit 17baf5c.
    @mrmin123
    mrmin123 committed Feb 10, 2017
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  2. Revert "clean up curator_page" 

    This reverts commit 01be808.
    @mrmin123
    mrmin123 committed Feb 10, 2017
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  3. re-fix page display; code cleanup

    @mrmin123
    mrmin123 committed Feb 10, 2017
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Commits on Feb 11, 2017

  1. clean up auth0.py; fix login states

    @mrmin123
    mrmin123 committed Feb 11, 2017
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Commits on Feb 16, 2017

  1. de-indent search.js; update search.py to get dashboard to work

    @mrmin123
    mrmin123 committed Feb 16, 2017
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Commits on Feb 17, 2017

  1. modify registry.js to look for lowercase view names, to make historyV… 

    …iew work; updates to search.py; update linkTos in curatoryHistory schema
    @mrmin123
    mrmin123 committed Feb 17, 2017
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  2. merge dev; update computational upgrade script

    @mrmin123
    mrmin123 committed Feb 17, 2017
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  3. half-fix gdm collections display

    @mrmin123
    mrmin123 committed Feb 17, 2017
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  4. update interpretation to fix collections

    @mrmin123
    mrmin123 committed Feb 17, 2017
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Commits on Feb 18, 2017

  1. Merge remote-tracking branch 'origin/dev' into 1287_mc_snovault

    @mrmin123
    mrmin123 committed Feb 18, 2017
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  2. update curator.js to support new type names

    @mrmin123
    mrmin123 committed Feb 18, 2017
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Commits on Feb 21, 2017

  1. revert changes to registry.js; begin fixing views from definition lev… 

    …el instead
    @mrmin123
    mrmin123 committed Feb 21, 2017
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  2. update curatorHistory calls to refer to new item types

    @mrmin123
    mrmin123 committed Feb 21, 2017
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  3. revise view registration to use new names

    @mrmin123
    mrmin123 committed Feb 21, 2017
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  4. fix user info embedding

    @mrmin123
    mrmin123 committed Feb 21, 2017
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  5. add setting of loadingComplete state in auth0 mixin; fixes edit-json … 

    …view downstream
    @mrmin123
    mrmin123 committed Feb 21, 2017
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Commits on Feb 23, 2017

  1. get edits/puts working??

    @mrmin123
    mrmin123 committed Feb 23, 2017
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  2. remove debug logs

    @mrmin123
    mrmin123 committed Feb 23, 2017
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  3. update linkTo for extra evidence

    @mrmin123
    mrmin123 committed Feb 23, 2017
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Commits on Feb 24, 2017

  1. change type checks to use new type names on GCI pages

    @mrmin123
    mrmin123 committed Feb 24, 2017
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Commits on Feb 27, 2017

  1. further fixes to types

    @mrmin123
    mrmin123 committed Feb 27, 2017
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  2. update updateInterpretationObj method to ping from database

    @mrmin123
    mrmin123 committed Feb 27, 2017
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  3. update pytest.ini and conftest.py

    @mrmin123
    mrmin123 committed Feb 27, 2017
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Commits on Mar 3, 2017

  1. update versions; get tests running

    @mrmin123
    mrmin123 committed Mar 3, 2017
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  2. add back test_indexing

    @mrmin123
    mrmin123 committed Mar 3, 2017
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  3. revise conftest

    @mrmin123
    mrmin123 committed Mar 3, 2017
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  4. add back test_indexing.py; bugfixes to certain tests

    @mrmin123
    mrmin123 committed Mar 3, 2017
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  5. additional fixes to tests and confs

    @mrmin123
    mrmin123 committed Mar 3, 2017
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  6. fix additional tests; update testing.js

    @mrmin123
    mrmin123 committed Mar 3, 2017
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Commits on Mar 4, 2017

  1. fix test_download tests

    @mrmin123
    mrmin123 committed Mar 4, 2017
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  2. fix additional tests

    @mrmin123
    mrmin123 committed Mar 4, 2017
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Commits on Mar 6, 2017

  1. remove console logs

    @mrmin123
    mrmin123 committed Mar 6, 2017
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Commits on Mar 7, 2017

  1. update to backend to include snovault.app_version; fixes failing tests

    @mrmin123
    mrmin123 committed Mar 7, 2017
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  2. remove print statements

    @mrmin123
    mrmin123 committed Mar 7, 2017
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  3. fix fixtures test; python tests all fixed

    @mrmin123
    mrmin123 committed Mar 7, 2017
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Commits on Mar 9, 2017

  1. update casing of orphaphenotype data obj and update tests to use new url

    @mrmin123
    mrmin123 committed Mar 9, 2017
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  2. rename other camel-cased objects; upgrade provisionalClassification u… 

    …pgarde to account for this
    @mrmin123
    mrmin123 committed Mar 9, 2017
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  3. fix mike cherry name in test

    @mrmin123
    mrmin123 committed Mar 9, 2017
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  4. rename extra-evidence object

    @mrmin123
    mrmin123 committed Mar 9, 2017
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  5. fix search, frontend and backend

    @mrmin123
    mrmin123 committed Mar 9, 2017
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Commits on Mar 13, 2017

  1. return csrft with login

    @mrmin123
    mrmin123 committed Mar 13, 2017
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Commits on Mar 14, 2017

  1. implement wsgi-args for tests; add wsgi-args to travis.yml

    @mrmin123
    mrmin123 committed Mar 14, 2017
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  2. update buildout to use custom snovault; update test

    @mrmin123
    mrmin123 committed Mar 14, 2017
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  3. update readme

    @mrmin123
    mrmin123 committed Mar 14, 2017
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  4. redirect custom snovault from mrmin123 to ClinGen repo

    @mrmin123
    mrmin123 committed Mar 14, 2017
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  5. rename javscript obj view registers

    @mrmin123
    mrmin123 committed Mar 14, 2017
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  6. update search string from orphaPhenotype to orphaphenotype

    @mrmin123
    mrmin123 committed Mar 14, 2017
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  7. update search string from orphaPhenotype to orphaphenotype; remove co… 

    …nsole logs
    @mrmin123
    mrmin123 committed Mar 14, 2017
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  8. update viewers

    @mrmin123
    mrmin123 committed Mar 14, 2017
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Commits on Mar 15, 2017

  1. update cloudconfig

    @mrmin123
    mrmin123 committed Mar 15, 2017
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  2. update casing of orphaphenotype

    @mrmin123
    mrmin123 committed Mar 15, 2017
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  3. rename orphaPhenotype to orphaphenotype

    @mrmin123
    mrmin123 committed Mar 15, 2017
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  4. fix cloud-config

    @mrmin123
    mrmin123 committed Mar 15, 2017
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  5. update versions

    @mrmin123
    mrmin123 committed Mar 15, 2017
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  6. Merge remote-tracking branch 'origin/dev' into 1287_mc_snovault

    @mrmin123
    mrmin123 committed Mar 15, 2017
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Commits on Mar 16, 2017

  1. add libffi-dev

    @kilodalton
    kilodalton committed Mar 16, 2017
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  2. Merge remote-tracking branch 'origin/kd_test_1287_mc_snovault' into 1… 

    …287_mc_snovault
    @mrmin123
    mrmin123 committed Mar 16, 2017
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  3. update casing of orphaphenotype

    @mrmin123
    mrmin123 committed Mar 16, 2017
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  4. change curator_page to CuratorPage

    @mrmin123
    mrmin123 committed Mar 16, 2017
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  5. rename schema, inserts, types

    @mrmin123
    mrmin123 committed Mar 16, 2017
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  6. update dump

    @mrmin123
    mrmin123 committed Mar 16, 2017
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  7. tweak tests

    @mrmin123
    mrmin123 committed Mar 16, 2017
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  8. make one-click login more reliable

    @mrmin123
    mrmin123 committed Mar 16, 2017
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Commits on Mar 17, 2017

  1. update commands in database-dumping.rst

    @mrmin123
    mrmin123 committed Mar 17, 2017
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Commits on Mar 24, 2017

  1. update snovault version

    @mrmin123
    mrmin123 committed Mar 24, 2017
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