SFU

Process an incoming file

To install

conda env create -f sfu.yml

Alternatively, for a shorter wait (conda is quite slow these days), the mamba system is recommended, install this in your base conda then:

mamba env create -f sfu.yml

To use

chmod +x SFU/*.py
chmod +x SFU/*.sh

One of the following.

A job submission:

sbatch SFU/Stg1_sub.sh -m model/directory -c Test/TestData.csv -d Out/directory

Starts an interactive job then finishes

SFU/Stg1_interactive.sh -m model/directory -c Test/TestData.csv -d Out/directory

Via python interactively

source/conda activate SFU

python SFU/SFU_Pred_hpc.py -m  model/directory -c Test/TestData.csv  -d Out/directory