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fix icsharpcode#337: use absolute paths consistently, even under work…
…ing dir WIP. This change updates the behavior of adding files under the current working dir when the RootPath is set If the rootpath is unset, the behavior is unchanged. If the rootpath is a relative directory under the current directory, the current directory + root path will be removed from the start of the entry filepath If the rootpath is an absolute directory under the current directory, the root path will be removed from the start of the entry filepath
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