scRNA-CellLines

single cell RNA sequencing of 8 breast cancer cell lines

Name		Name	Last commit message	Last commit date
Latest commit History 5 Commits
CNA.ipynb		CNA.ipynb
Calc pySCENIC.ipynb		Calc pySCENIC.ipynb
Exp IRF1 activity.ipynb		Exp IRF1 activity.ipynb
Exp NFKB activity.ipynb		Exp NFKB activity.ipynb
Figure1 Calc PreProcessing.ipynb		Figure1 Calc PreProcessing.ipynb
Figure2 CNA subpopulations.ipynb		Figure2 CNA subpopulations.ipynb
Figure2 Integrated CNA among datasets.ipynb		Figure2 Integrated CNA among datasets.ipynb
Figure3 Subpopulation.ipynb		Figure3 Subpopulation.ipynb
Figure4 CDH1 DEGs and Regulon.ipynb		Figure4 CDH1 DEGs and Regulon.ipynb
Figure5 Regulons and IRF1.ipynb		Figure5 Regulons and IRF1.ipynb
FigureS4 TCGA CDH1 Cov.ipynb		FigureS4 TCGA CDH1 Cov.ipynb
GSVA.R		GSVA.R
METABRIC.TX.R		METABRIC.TX.R
Metabric.R		Metabric.R
README.md		README.md
Rebuttal CNV and RNA.ipynb		Rebuttal CNV and RNA.ipynb
Rebuttal Integration with Public scData.ipynb		Rebuttal Integration with Public scData.ipynb
calcCNV.py		calcCNV.py
calcGSVA.py		calcGSVA.py
calcInserts.py		calcInserts.py
calcInserts.sh		calcInserts.sh
calcNMF.py		calcNMF.py
calcPIDCNet.jl		calcPIDCNet.jl
calcScrublet.py		calcScrublet.py
calcTF.py		calcTF.py
plot.py		plot.py
utils.py		utils.py

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