Merge pull request #141 from California-Planet-Search/next-release

Version 1.1.3

.travis.yml

@@ -6,6 +6,8 @@ cache:
      - $HOME/download
      - $HOME/miniconda2
      - $HOME/miniconda3
+     - $HOME/.cache/pip
+     - $HOME/.ccache
 
 python:
   - "2.7"
@@ -22,9 +24,10 @@ before_install:
     - sudo ln -s /run/shm /dev/shm
 
 install:
-    - conda install --yes python=$TRAVIS_PYTHON_VERSION pip numpy scipy matplotlib cython pandas
-    - pip install nose coveralls nbformat nbconvert jupyter_client ipykernel
-    - pip install . --upgrade
+    - conda install --yes pip numpy scipy matplotlib cython pandas nose nbformat nbconvert jupyter_client ipykernel
+    - if [ ${py} == "2" ]; then conda install --yes configparser==3.5.0b2; fi
+    - pip install coveralls
+    - pip install .
     - python setup.py build_ext -i
 
 # configure a headless display using xvbf to test plot generation
@@ -33,7 +36,6 @@ before_script:
     - "sh -e /etc/init.d/xvfb start"
     - sleep 2 # give xvfb some time to start
 
-# run tests in Travis-CI virtual env
 script:
     - nosetests radvel --with-coverage --cover-package=radvel
 

README.md

@@ -7,6 +7,7 @@ General Toolkit for Modeling Radial Velocities.
 [![Coverage Status](https://coveralls.io/repos/github/California-Planet-Search/radvel/badge.svg?branch=master)](https://coveralls.io/github/California-Planet-Search/radvel?branch=master)
 [![Documentation Status](https://readthedocs.org/projects/radvel/badge/?version=latest)](http://radvel.readthedocs.io/en/latest/?badge=latest)
 [![PyPI version](https://badge.fury.io/py/radvel.svg)](https://badge.fury.io/py/radvel)
+[![ASCL:1801.012](https://img.shields.io/badge/ascl-1801.012-blue.svg?colorB=262255)](http://ascl.net/1801.012)
 [![Requirements Status](https://requires.io/github/California-Planet-Search/radvel/requirements.svg?branch=next-release)](https://requires.io/github/California-Planet-Search/radvel/requirements/?branch=next-release)
 
 

radvel/__init__.py

@@ -13,7 +13,7 @@
 __all__=['model', 'likelihood', 'posterior', 'mcmc', 'prior', 'utils',
          'fitting', 'report', 'cli', 'driver', 'gp']
 
-__version__ = '1.1.2'
+__version__ = '1.1.3'
 
 MODULEDIR, filename = os.path.split(__file__)
 DATADIR = os.path.join(sys.prefix, 'radvel_example_data')

radvel/mcmc.py

@@ -242,7 +242,7 @@ def mcmc(post, nwalkers=50, nrun=10000, ensembles=8, checkinterval=50, burnGR=1.
 
     df = pd.DataFrame(
         statevars.tchains.reshape(statevars.ndim,statevars.tchains.shape[1]*statevars.tchains.shape[2]).transpose(),
-        columns=post.list_vary_params())
+        columns=pcopy.list_vary_params())
     df['lnprobability'] = np.hstack(statevars.lnprob)
 
     df = df.iloc[::thin]