DESCRIPTION

Package: seqsender
Type: Package
Title: Public Database Submission Pipeline
Version: 1.1.0
Authors@R: 
  c(
    person(given="Dakota", family="Howard", role=c("aut","cre"), 
           email="psv4@cdc.gov", comment=c(ORCID="0000-0002-7674-0385")), 
    person(given="Reina", family="Chau", role=c("aut"), 
           email="snu3@cdc.gov", comment=c(ORCID="0000-0003-3012-1404")),
    person(given="Peter", family="Cook", role=c("aut"), 
           email="ooj4@cdc.gov"), 
    person(given="Kristine", family="Lacek", role=c("aut"), 
           email="qgx6@cdc.gov", comment=c(ORCID="0000-0002-6247-5082")),   
    person(given="Amanda", family="Sullivan", role=c("aut"), 
           email="xpa3@cdc.gov"), 
    person(given="Vikram", family="Setlur", role=c("aut"), 
           email="xoe7@cdc.gov"),     
    person(given="Thomas", family="Stark", role=c("aut"), 
           email="ynh4@cdc.gov"),     
    person(given="Brian", family="Lee", role=c("aut"), 
           email="fya1@cdc.gov"),     
    person(given="Benjamin", family="Rambo-Martin", role=c("aut"), 
           email="nbx0@cdc.gov", comment=c(ORCID="0000-0002-8591-3954")) 
  )
Description: seqsender is a Python program that is designed to automate the process of generating 
  necessary submission files (e.g. submission.xml, submission.zip, etc.) 
  and then bulk uploading them via FTP to NCBI archives such as Genbank, BioSample, and SRA. 
  Additionally, the program can batch uploading submissions of meta- and sequence-data to GISAID 
  using their Command Line Interface Tools (e.g., EpiFlu and EpiCoV CLI). 
  Currently, the pipeline is capable of uploading Influenza A Virus and SARS-COV-2 data.
RoxygenNote: 7.2.3
License: Apache License (== 2.0) + file LICENSE
URL: https://github.com/CDCgov/seqsender
GITHUB_PAGES: https://cdcgov.github.io/seqsender
Docker: cdcgov/seqsender-dev:latest
Encoding: UTF-8
VignetteBuilder: knitr
BugReports: https://github.com/CDCgov/seqsender/issues